YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6730390, gi\|6...
Organism:	Escherichia coli
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6730390, gi|6....

Description	E-value	Query Range	Subject Range
HDEA_BRUSU - Probable acid stress chaperone HdeA OS=Brucella suis biovar 1 (strain 1330) GN=hdeA PE=3 SV=1 HDEA_BRUSU - Chaperone-like protein hdeA OS=Brucella suis GN=hdeA PE=2 SV=1	128.0	[0..1]	[85..29]
gi\|188018235, gi... - gi\|188018235\|gb\|EDU56357.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC4113... gi\|13363864, gi\|... - gi\|15833644\|ref\|NP_312417.1\| acid-resistance protein [Escherichia coli O157:H7 str. Sakai], gi\|13363... gi\|110616894, gi... - gi\|110807346\|ref\|YP_690866.1\| acid-resistance protein [Shigella flexneri 5 str. 8401], gi\|110616894\|... gi\|124528573, gi... - gi\|124528573\|ref\|ZP_01699851.1\| HNS-dependent expression A [Escherichia coli B], gi\|124500414\|gb\|EAY... gi\|195935037 - gi\|195935037\|ref\|ZP_03080419.1\| acid-resistance protein [Escherichia coli O157:H7 str. EC4024] gi\|170083021, gi... - gi\|170083021\|ref\|YP_001732341.1\| stress response protein acid-resistance protein [Escherichia coli s... gi\|208814441, gi... - gi\|208814441\|ref\|ZP_03255770.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC... gi\|208806000, gi... - gi\|208806000\|ref\|ZP_03248337.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC... gi\|209158338, gi... - gi\|209396938\|ref\|YP_002272986.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. E... gi\|208820313, gi... - gi\|208820313\|ref\|ZP_03260633.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC... gi\|217321211, gi... - gi\|217324990\|ref\|ZP_03441074.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. TW... gi\|209920969, gi... - gi\|209920969\|ref\|YP_002295053.1\| acid-resistance protein [Escherichia coli SE11], gi\|209914228\|dbj\|B... gi\|168759590, gi... - gi\|189369585\|gb\|EDU88001.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC4501... gi\|168753319, gi... - gi\|189359099\|gb\|EDU77518.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC4401... gi\|168772540, gi... - gi\|187771608\|gb\|EDU35452.1\| hns-dependent expression protein A (HdeA) [Escherichia coli O157:H7 str.... gi\|168765914, gi... - gi\|189364511\|gb\|EDU82930.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC4486... gi\|168785372, gi... - gi\|189374305\|gb\|EDU92721.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC869]... gi\|189002647, gi... - gi\|189002647\|gb\|EDU71633.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC4076... gi\|170018261, gi... - gi\|170018261\|ref\|YP_001723215.1\| acid-resistance protein [Escherichia coli ATCC 8739], gi\|169753189\|... gi\|189380037, gi... - gi\|189380037\|gb\|EDU98453.1\| hns-dependent expression protein A [Escherichia coli O157:H7 str. EC508]... EG11398 - stress response protein acid-resistance protein / Periplasmic chaperone of acid-denatured proteins; ... gi\|15804054, gi\|... - gi\|15804054\|ref\|NP_290090.1\| acid-resistance protein [Escherichia coli O157:H7 EDL933], gi\|12518219\|... EG11398 - stress response protein acid-resistance protein / Periplasmic chaperone of acid-denatured proteins; ... HDEA_SHIFL - Acid stress chaperone HdeA OS=Shigella flexneri GN=hdeA PE=3 SV=1 gi\|24054006, gi\|... - gi\|24114782\|ref\|NP_709292.1\| acid-resistance protein [Shigella flexneri 2a str. 301], gi\|24054006\|gb... gi\|30043467, gi\|... - gi\|30065205\|ref\|NP_839376.1\| acid-resistance protein [Shigella flexneri 2a str. 2457T], gi\|30043467\|... HDEA_ECO57 - Acid stress chaperone HdeA OS=Escherichia coli O157:H7 GN=hdeA PE=3 SV=1 gi\|238863581, gi... - gi\|238902599\|ref\|YP_002928395.1\| stress response protein acid-resistance protein [Escherichia coli B... gi\|251786757, gi... - gi\|251786757\|ref\|YP_003001061.1\| hypothetical protein B21_03311 [Escherichia coli BL21], gi\|24237903... gi\|253979489, gi... - gi\|254290182\|ref\|YP_003055930.1\| stress response protein acid-resistance protein [Escherichia coli B... gi\|226839191, gi... - gi\|254038685\|ref\|ZP_04872741.1\| hns-dependent expression protein A [Escherichia sp. 1_1_43], gi\|2268... gi\|254163432, gi... - gi\|254163432\|ref\|YP_003046540.1\| stress response protein acid-resistance protein [Escherichia coli B... gi\|254795462, gi... - gi\|254795462\|ref\|YP_003080299.1\| stress response protein acid-resistance protein [Escherichia coli O... gi\|74313944, gi\|... - gi\|74313944\|ref\|YP_312363.1\| acid-resistance protein [Shigella sonnei Ss046], gi\|73857421\|gb\|AAZ9012... gi\|75516029, gi\|... - gi\|75516029\|ref\|ZP_00738147.1\| hypothetical protein Ecol5_01000088 [Escherichia coli 53638], gi\|1884... gi\|75260202, gi\|... - gi\|75260202\|ref\|ZP_00731470.1\| hypothetical protein EcolE2_01000089 [Escherichia coli E22], gi\|19306... gi\|75237451, gi\|... - gi\|75237451\|ref\|ZP_00721484.1\| hypothetical protein EcolE1_01001528 [Escherichia coli E110019], gi\|1... gi\|85676534, gi\|... - gi\|89110503\|ref\|AP_004283.1\| stress response protein acid-resistance protein [Escherichia coli str. ... gi\|81247285, gi\|... - gi\|82545874\|ref\|YP_409821.1\| acid-resistance protein [Shigella boydii Sb227], gi\|81247285\|gb\|ABB6799... gi\|82778661, gi\|... - gi\|82778661\|ref\|YP_405010.1\| acid-resistance protein [Shigella dysenteriae Sd197], gi\|81242809\|gb\|AB... gi\|187733735, gi... - gi\|75179863\|ref\|ZP_00699850.1\| hypothetical protein SboyB_01000190 [Shigella boydii BS512], gi\|18773... gi\|194425405, gi... - gi\|83588632\|ref\|ZP_00927256.1\| hypothetical protein Ecol1_01000264 [Escherichia coli 101-1], gi\|1944... gi\|194420627, gi... - gi\|83571544\|ref\|ZP_00922984.1\| hypothetical protein Sdys1_01000254 [Shigella dysenteriae 1012], gi\|1... gi\|75231642, gi\|... - gi\|75231642\|ref\|ZP_00718000.1\| hypothetical protein EcolB7_01000326 [Escherichia coli B7A], gi\|19116... gi\|75211876, gi\|... - gi\|75211876\|ref\|ZP_00711940.1\| hypothetical protein EcolB_01001233 [Escherichia coli B171], gi\|19442... gi\|157162988, gi... - gi\|75197429\|ref\|ZP_00707499.1\| hypothetical protein EcolH_01003246 [Escherichia coli HS], gi\|1571629... HDEA_ECOLI - Protein hdeA precursor (10K-S protein) - Escherichia coli gi\|157158855, gi... - gi\|75188276\|ref\|ZP_00701543.1\| hypothetical protein EcolE_01001521 [Escherichia coli E24377A], gi\|15... gi\|218353951, gi... - gi\|218697219\|ref\|YP_002404886.1\| acid-resistance protein [Escherichia coli 55989], gi\|218353951\|emb\|... gi\|218556060, gi... - gi\|218556060\|ref\|YP_002388973.1\| acid-resistance protein [Escherichia coli IAI1], gi\|218362828\|emb\|C... gi\|218707139, gi... - gi\|218707139\|ref\|YP_002414658.1\| acid-resistance protein [Escherichia coli UMN026], gi\|218434236\|emb...	128.0	[0..1]	[89..22]
gi\|227883669, gi... - gi\|227883669\|ref\|ZP_04001474.1\| acid-resistance protein [Escherichia coli 83972], gi\|227839548\|gb\|EE... gi\|226902540, gi... - gi\|237703276\|ref\|ZP_04533757.1\| stress response protein [Escherichia sp. 3_2_53FAA], gi\|226902540\|gb... gi\|215488787, gi... - gi\|215488787\|ref\|YP_002331218.1\| acid-resistance protein [Escherichia coli O127:H6 str. E2348/69], g... gi\|218691794, gi... - gi\|218691794\|ref\|YP_002400006.1\| acid-resistance protein [Escherichia coli ED1a], gi\|218429358\|emb\|C... gi\|218367354, gi... - gi\|218560585\|ref\|YP_002393498.1\| acid-resistance protein [Escherichia coli S88], gi\|218367354\|emb\|CA... gi\|218702275, gi... - gi\|218702275\|ref\|YP_002409904.1\| acid-resistance protein [Escherichia coli IAI39], gi\|218372261\|emb\|... gi\|75242695, gi\|... - gi\|75242695\|ref\|ZP_00726439.1\| hypothetical protein EcolF_01000608 [Escherichia coli F11], gi\|191170... gi\|26110572, gi\|... - gi\|26250143\|ref\|NP_756183.1\| acid-resistance protein [Escherichia coli CFT073], gi\|26110572\|gb\|AAN82... gi\|115514916, gi... - gi\|117625792\|ref\|YP_859115.1\| acid-resistance protein [Escherichia coli APEC O1], gi\|115514916\|gb\|AB... gi\|91213015, gi\|... - gi\|91213015\|ref\|YP_543001.1\| acid-resistance protein [Escherichia coli UTI89], gi\|91074589\|gb\|ABE094... gi\|110643755, gi... - gi\|110643755\|ref\|YP_671485.1\| acid-resistance protein [Escherichia coli 536], gi\|110345347\|gb\|ABG715...	128.0	[0..1]	[89..22]
HDEA_BRUME - Chaperone-like protein hdeA OS=Brucella melitensis GN=hdeA PE=2 SV=2 gi\|189022994, gi... - gi\|189022994\|ref\|YP_001932735.1\| acid-resistance protein [Brucella abortus S19], gi\|189021568\|gb\|ACD... HDEA_BRUME - Probable acid stress chaperone HdeA OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC... gi\|254691242 - gi\|254691242\|ref\|ZP_05154496.1\| acid-resistance protein [Brucella abortus bv. 6 str. 870] gi\|254695455 - gi\|254695455\|ref\|ZP_05157283.1\| acid-resistance protein [Brucella abortus bv. 3 str. Tulya] gi\|225642283, gi... - gi\|225686178\|ref\|YP_002734150.1\| HNS-dependent expression A [Brucella melitensis ATCC 23457], gi\|225... gi\|237788097, gi... - gi\|237817284\|ref\|ZP_04596276.1\| acid-resistance protein [Brucella abortus str. 2308 A], gi\|237788097... HDEA_BRUA2 - Probable acid stress chaperone HdeA OS=Brucella abortus (strain 2308) GN=hdeA PE=1 SV=1 gi\|254702741 - gi\|254702741\|ref\|ZP_05164569.1\| acid-resistance protein [Brucella suis bv. 3 str. 686] gi\|254732476 - gi\|254732476\|ref\|ZP_05191054.1\| acid-resistance protein [Brucella abortus bv. 4 str. 292] HDEA_BRUAB - Chaperone-like protein hdeA OS=Brucella abortus GN=hdeA PE=2 SV=1 gi\|254699029 - gi\|254699029\|ref\|ZP_05160857.1\| acid-resistance protein [Brucella abortus bv. 2 str. 86/8/59] HDEA_BRUAB - Probable acid stress chaperone HdeA OS=Brucella abortus biovar 1 (strain 9-941) GN=hdeA PE=3 SV=1 gi\|254699619 - gi\|254699619\|ref\|ZP_05161447.1\| acid-resistance protein [Brucella suis bv. 5 str. 513] HDEA_BRUSI - Probable acid stress chaperone HdeA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=hdeA PE=3 S... HDEA_BRUC2 - Probable acid stress chaperone HdeA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=hdeA PE=3 ...	126.0	[0..1]	[85..29]
gi\|115423856, gi... - gi\|187479269\|ref\|YP_787294.1\| acid-resistance protein, ( chaperone) [Bordetella avium 197N], gi\|1154...	119.0	[0..7]	[78..23]
gi\|25526713 - pir\|\|AI3622 protein hdea precursor [imported] - Brucella melitensis (strain 16M) gi\|17985112, gi\|... - gi\|17989251\|ref\|NP_541884.1\| acid-resistance protein [Brucella melitensis 16M], gi\|17985112\|gb\|AAL54...	114.0	[0..8]	[85..1]
gi\|111282739, gi... - gi\|120608796\|ref\|YP_968474.1\| hypothetical protein Aave_0086 [Acidovorax avenae subsp. citrulli AAC0...	90.0	[0..10]	[67..48]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADAQKAADNK KPVNSWTCED FLAVDESFQP TAVGFAEALN NKDKPEDAVL DVQGIATVTP  60
   61 AIVQACTQDK QANFKDKVKG EWDKIKKDM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1bg8A
Description:	Protein HNS-dependent expression A; HdeA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits