YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165989669, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165989669, gi....

Description	E-value	Query Range	Subject Range
gi\|75437401, gi\|... - gi\|75437401\|ref\|ZP_00733422.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	3.0E-16	[1..79]	[64..135]
gi\|77957392, gi\|... - gi\|77957392\|ref\|ZP_00821449.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|77961042, gi\|... - gi\|77961042\|ref\|ZP_00824890.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia moll...	5.0E-14	[1..79]	[1..79]
gi\|238726269, gi... - gi\|77977394\|ref\|ZP_00832844.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia inte... gi\|238760318, gi... - gi\|238760318\|ref\|ZP_04621460.1\| Cell division protein zapB [Yersinia aldovae ATCC 35236], gi\|2387014...	5.0E-14	[1..79]	[1..79]
gi\|90325401, gi\|... - gi\|90413628\|ref\|ZP_01221618.1\| hypothetical protein P3TCK_00365 [Photobacterium profundum 3TCK], gi\|...	7.0E-14	[1..79]	[1..79]
ZAPB_PHOPR - Cell division protein ZapB OS=Photobacterium profundum GN=zapB PE=3 SV=1 ZAPB_PHOPR - Cell division protein ZapB OS=Photobacterium profundum (strain SS9) GN=zapB PE=3 SV=1	8.0E-14	[1..79]	[4..82]
gi\|77972975, gi\|... - gi\|77972975\|ref\|ZP_00828529.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia fred...	2.0E-13	[1..79]	[1..79]
ZAPB_PHOLL - Cell division protein ZapB OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1055... ZAPB_PHOLL - Cell division protein zapB OS=Photorhabdus luminescens subsp. laumondii GN=zapB PE=3 SV=1	3.0E-13	[1..79]	[1..79]
ZAPB_ERWCT - Cell division protein ZapB OS=Erwinia carotovora subsp. atroseptica GN=zapB PE=3 SV=1 ZAPB_PECAS - Cell division protein ZapB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=zapB ...	2.0E-12	[1..79]	[1..79]
tr\|A0A0X8UEL2\|A0... - Septal ring assembly protein ZapB OS=Escherichia coli (strain K12) GN=C3026_21230 PE=4 SV=1 gi\|253326477, gi... - gi\|253775433\|ref\|YP_003038264.1\| protein of unknown function DUF904 [Escherichia coli BL21(DE3)], gi... gi\|38704212 - gi\|38704212\|ref\|NP_312880.2\| hypothetical protein ECs4853 [Escherichia coli O157:H7] gi\|208733201, gi... - gi\|208811924\|ref\|ZP_03253253.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740453, gi... - gi\|208820330\|ref\|ZP_03260650.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|110644264, gi... - gi\|110644264\|ref\|YP_671994.1\| hypothetical protein ECP_4137 [Escherichia coli 536], gi\|110345856\|gb\|... gi\|195937570 - gi\|195937570\|ref\|ZP_03082952.1\| hypothetical protein EscherichcoliO157_14162 [Escherichia coli O157:... gi\|38704212 - gi\|38704212\|ref\|NP_312880.2\| hypothetical protein ECs4853 [Escherichia coli O157:H7 str. Sakai] gi\|124501291, gi... - gi\|124527589\|ref\|ZP_01699054.1\| protein of unknown function DUF904 [Escherichia coli B], gi\|12450129... gi\|208807947, gi... - gi\|208807947\|ref\|ZP_03250284.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|83569806 - gi\|83569806\|ref\|ZP_00921255.1\| COG3074: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|217320544, gi... - gi\|217324323\|ref\|ZP_03440407.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... ZAPB_ECO5E - Cell division protein ZapB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=zapB PE=3 SV=1 ZAPB_ECOSE - Cell division protein ZapB OS=Escherichia coli (strain SE11) GN=zapB PE=3 SV=1 gi\|157163403, gi... - gi\|75197800\|ref\|ZP_00707870.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157156566, gi... - gi\|75188663\|ref\|ZP_00701930.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168748775, gi... - gi\|188016766\|gb\|EDU54888.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... ZAPB_SHIB3 - Cell division protein ZapB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=zapB PE=3 ... gi\|83586228 - gi\|83586228\|ref\|ZP_00924864.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|190907037, gi... - gi\|75240321\|ref\|ZP_00724261.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168775237, gi... - gi\|187769192\|gb\|EDU33036.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|75238371 - gi\|75238371\|ref\|ZP_00722370.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110617337, gi... - gi\|110807789\|ref\|YP_691309.1\| hypothetical protein SFV_3999 [Shigella flexneri 5 str. 8401], gi\|1106... ZAPB_ECOLC - Cell division protein ZapB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=zapB PE=3 S... gi\|191166412, gi... - gi\|75230449\|ref\|ZP_00716935.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168761689, gi... - gi\|189367863\|gb\|EDU86279.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|75211258 - gi\|75211258\|ref\|ZP_00711357.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168768230, gi... - gi\|189362592\|gb\|EDU81011.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|188492053, gi... - gi\|75513886\|ref\|ZP_00736239.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75258089 - gi\|75258089\|ref\|ZP_00729550.1\| COG3074: Uncharacterized protein conserved in bacteria [Escherichia c...	2.0E-12	[1..79]	[1..79]
YIIU_ECOLI - Hypothetical protein yiiU - Escherichia coli gi\|13364329 - gi\|13364329\|dbj\|BAB38276.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] ZAPB_ECOHS - Cell division protein ZapB OS=Escherichia coli O9:H4 (strain HS) GN=zapB PE=3 SV=2 ZAPB_ECOL5 - Cell division protein ZapB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=zapB PE=3 SV=2 ZAPB_ECOUT - Cell division protein ZapB OS=Escherichia coli (strain UTI89 / UPEC) GN=zapB PE=3 SV=2 EG11878 - FtsZ stabilizer, septal ring assembly factor, cell division stimulator / FtsZ stabilizer, coiled-coi... ZAPB_SHIFL - Cell division protein ZapB OS=Shigella flexneri GN=zapB PE=3 SV=1 ZAPB_ECO57 - Cell division protein ZapB OS=Escherichia coli O157:H7 GN=zapB PE=3 SV=1 gi\|227885330, gi... - gi\|227885330\|ref\|ZP_04003135.1\| cell division protein zapB [Escherichia coli 83972], gi\|227837706\|gb... gi\|30043039, gi\|... - gi\|30064779\|ref\|NP_838950.1\| hypothetical protein S3741 [Shigella flexneri 2a str. 2457T], gi\|300430... EG11878 - FtsZ stabilizer, septal ring assembly factor, cell division stimulator / FtsZ stabilizer, coiled-coi... gi\|251787191, gi... - gi\|251787191\|ref\|YP_003001495.1\| hypothetical protein B21_03762 [Escherichia coli BL21], gi\|24237946... gi\|15804517, gi\|... - gi\|15804517\|ref\|NP_290557.1\| hypothetical protein Z5473 [Escherichia coli O157:H7 EDL933], gi\|125188... ZAPB_ECOBW - Cell division protein ZapB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=zapB PE=3 SV=1 gi\|254290629, gi... - gi\|254290629\|ref\|YP_003056377.1\| hypothetical protein ECD_03813 [Escherichia coli BL21(DE3)], gi\|253... gi\|254163878, gi... - gi\|254163878\|ref\|YP_003046986.1\| hypothetical protein ECB_03813 [Escherichia coli B str. REL606], gi... gi\|254795928, gi... - gi\|254795928\|ref\|YP_003080765.1\| hypothetical protein ECSP_4991 [Escherichia coli O157:H7 str. TW143... ZAPB_ECO24 - Cell division protein ZapB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=zapB PE=3 SV=2 gi\|189373430, gi... - gi\|189404885\|ref\|ZP_02811791.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|189357103, gi... - gi\|189402169\|ref\|ZP_02780619.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189001399, gi... - gi\|189010223\|ref\|ZP_02805852.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... ZAPB_ECOL6 - Cell division protein ZapB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=zapB PE... gi\|170121457, gi... - gi\|170769649\|ref\|ZP_02904102.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|194414472, gi... - gi\|194427432\|ref\|ZP_03059981.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194414472... gi\|193068080, gi... - gi\|193068080\|ref\|ZP_03049045.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192958... gi\|193064002, gi... - gi\|193064002\|ref\|ZP_03045088.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192929467\|... gi\|189405844, gi... - gi\|189405844\|ref\|ZP_02824499.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... ZAPB_SHIBS - Cell division protein ZapB OS=Shigella boydii serotype 4 (strain Sb227) GN=zapB PE=3 SV=1 gi\|89110101, gi\|... - gi\|89110101\|ref\|AP_003881.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... ZAPB_SHISS - Cell division protein ZapB OS=Shigella sonnei (strain Ss046) GN=zapB PE=3 SV=1 ZAPB_SHIDS - Cell division protein ZapB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=zapB PE=3 SV=1 YIIU_ECOL6, ZAPB... - Cell division protein ZapB OS=Escherichia coli O6 GN=zapB PE=3 SV=1, Uncharacterized protein yiiU - ... ZAPB_ECOSM - Cell division protein ZapB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=zapB PE=3 SV=1 ZAPB_ECODH - Cell division protein ZapB OS=Escherichia coli (strain K12 / DH10B) GN=zapB PE=3 SV=1 gi\|56480483, gi\|... - gi\|56480483\|ref\|NP_709732.2\| hypothetical protein SF4006 [Shigella flexneri 2a str. 301], gi\|5638403... ZAPB_SHIF8 - Cell division protein ZapB OS=Shigella flexneri serotype 5b (strain 8401) GN=zapB PE=3 SV=2 sp\|B7UNP8\|ZAPB_ECO27 - Cell division protein ZapB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=zapB PE=3 SV=1 ZAPB_ECOLU - Cell division protein ZapB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=zapB PE=3 SV=1 ZAPB_ECO7I - Cell division protein ZapB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=zapB PE=3 SV=1 ZAPB_ESCF3 - Cell division protein ZapB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) G... ZAPB_ECO27 - Cell division protein ZapB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=zapB PE=3 SV=1 gi\|194438268, gi... - gi\|194438268\|ref\|ZP_03070359.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442270... gi\|194433195, gi... - gi\|194433195\|ref\|ZP_03065476.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... ZAPB_ECO55 - Cell division protein ZapB OS=Escherichia coli (strain 55989 / EAEC) GN=zapB PE=3 SV=1 ZAPB_ECO81 - Cell division protein ZapB OS=Escherichia coli O81 (strain ED1a) GN=zapB PE=3 SV=1 ZAPB_ECO45 - Cell division protein ZapB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=zapB PE=3 SV=1 ZAPB_ECO8A - Cell division protein ZapB OS=Escherichia coli O8 (strain IAI1) GN=zapB PE=3 SV=1	2.0E-12	[1..79]	[3..81]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFEVFEKLE VKVQQAIDTI TLLQMEIEEL KEKNNTLTQE VQDAAGSREA LVRENEQLKQ  60
   61 EQHVWQDRLR ALLGKMEEV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.35
Match:	1d7mA
Description:	Coiled-coil dimerization domain from cortexillin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits