YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|193063844, gi...
Organism:	Escherichia coli E22
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|193063844, gi....

Description	E-value	Query Range	Subject Range
RNPA_SODGM - Ribonuclease P protein component OS=Sodalis glossinidius (strain morsitans) GN=rnpA PE=3 SV=1	131.0	[0..1]	[117..1]
RNPA_YERPA - Ribonuclease P protein component OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rnpA PE=3 SV=1 RNPA_YERPN - Ribonuclease P protein component OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rnpA PE=3 SV=1 RNPA_YERP3 - Ribonuclease P protein component OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=r... gi\|89101594 - gi\|89101594\|ref\|ZP_01174320.1\| COG0594: RNase P protein component [Yersinia pestis biovar Orientalis... RNPA_YERPS - Ribonuclease P protein component OS=Yersinia pseudotuberculosis GN=rnpA PE=3 SV=1 gi\|150260965, gi... - gi\|150260965\|ref\|ZP_01917693.1\| ribonuclease P protein [Yersinia pestis CA88-4125], gi\|149290373\|gb\|... gi\|229839807, gi... - gi\|229839807\|ref\|ZP_04459966.1\| protein C5 component of RNase P [Yersinia pestis biovar Orientalis s... RNPA_YERPE - Ribonuclease P protein component OS=Yersinia pestis GN=rnpA PE=3 SV=1 RNPA_YERPP - Ribonuclease P protein component OS=Yersinia pestis (strain Pestoides F) GN=rnpA PE=3 SV=1 gi\|229841892, gi... - gi\|229841892\|ref\|ZP_04462048.1\| protein C5 component of RNase P [Yersinia pestis biovar Orientalis s... gi\|229896769, gi... - gi\|229896769\|ref\|ZP_04511932.1\| protein C5 component of RNase P [Yersinia pestis Pestoides A], gi\|22... gi\|21961129, gi\|... - gi\|22127983\|ref\|NP_671406.1\| ribonuclease P [Yersinia pestis KIM], gi\|21961129\|gb\|AAM87657.1\|AE01401... RNPA_YERPS - Ribonuclease P protein component OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rnpA ... gi\|45443731, gi\|... - gi\|45443731\|ref\|NP_995270.1\| ribonuclease P [Yersinia pestis biovar Microtus str. 91001], gi\|4543860... gi\|15981990, gi\|... - gi\|218931077\|ref\|YP_002348952.1\| ribonuclease P [Yersinia pestis CO92], gi\|16124209\|ref\|NP_407522.1\|...	125.0	[0..1]	[119..1]
RNPA_PECAS - Ribonuclease P protein component OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... RNPA_ERWCT - Ribonuclease P protein component OS=Erwinia carotovora subsp. atroseptica GN=rnpA PE=3 SV=1	125.0	[0..1]	[117..1]
RNPA_PHOLL - Ribonuclease P protein component OS=Photorhabdus luminescens subsp. laumondii GN=rnpA PE=3 SV=1 RNPA_PHOLL - Ribonuclease P protein component OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CI...	125.0	[0..1]	[119..1]
RNPA_YERE8 - Ribonuclease P protein component OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 1... gi\|77973773 - gi\|77973773\|ref\|ZP_00829318.1\| COG0594: RNase P protein component [Yersinia frederiksenii ATCC 33641...	125.0	[0..1]	[119..1]
gi\|77958162 - gi\|77958162\|ref\|ZP_00822200.1\| COG0594: RNase P protein component [Yersinia bercovieri ATCC 43970]	124.0	[0..1]	[119..1]
gi\|227165130, gi... - gi\|227354812\|ref\|ZP_03839229.1\| ribonuclease P protein component [Proteus mirabilis ATCC 29906], gi\|... RNPA_PROMI - Ribonuclease P protein component OS=Proteus mirabilis GN=rnpA PE=3 SV=1 RNPA_PROMH - Ribonuclease P protein component OS=Proteus mirabilis (strain HI4320) GN=rnpA PE=3 SV=1	124.0	[0..1]	[119..1]
gi\|29139609, gi\|... - gi\|29143973\|ref\|NP_807315.1\| ribonuclease P [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|16762485 - gi\|16762485\|ref\|NP_458102.1\| ribonuclease P [Salmonella enterica subsp. enterica serovar Typhi str. ... RNPA_SALTI - Ribonuclease P protein component OS=Salmonella typhi GN=rnpA PE=3 SV=1 RNPA_SALTY - Ribonuclease P protein component OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... RNPA_SALPA - Ribonuclease P protein component OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rnpA PE=3 ... RNPA_SALPA - Ribonuclease P protein component OS=Salmonella paratyphi A GN=rnpA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rnpA] [protein=ribonuclease P] [protein_id=YP_005240108.1] [location=4059535..4059894] RNPA_SALTI - Ribonuclease P protein component OS=Salmonella typhi GN=rnpA PE=3 SV=1 RNPA_SALTY - Ribonuclease P protein component OS=Salmonella typhimurium GN=rnpA PE=3 SV=1 gi\|197243924, gi... - gi\|197265669\|ref\|ZP_03165743.1\| ribonuclease P protein component [Salmonella enterica subsp. enteric... RNPA_SALDC - Ribonuclease P protein component OS=Salmonella dublin (strain CT_02021853) GN=rnpA PE=3 SV=1 gi\|200388996, gi... - gi\|200388996\|ref\|ZP_03215608.1\| ribonuclease P protein component [Salmonella enterica subsp. enteric... gi\|204928601, gi... - gi\|204928601\|ref\|ZP_03219800.1\| ribonuclease P protein component [Salmonella enterica subsp. enteric... RNPA_SALHS - Ribonuclease P protein component OS=Salmonella heidelberg (strain SL476) GN=rnpA PE=3 SV=1 gi\|194458165, gi... - gi\|194471801\|ref\|ZP_03077785.1\| ribonuclease P protein component [Salmonella enterica subsp. enteric... RNPA_SALSV - Ribonuclease P protein component OS=Salmonella schwarzengrund (strain CVM19633) GN=rnpA PE=3 SV=1 RNPA_SALTY - Ribonuclease P protein component OS=Salmonella typhimurium GN=rnpA PE=3 SV=1 RNPA_SALA4 - Ribonuclease P protein component OS=Salmonella agona (strain SL483) GN=rnpA PE=3 SV=1 gi\|168242060, gi... - gi\|205339035\|gb\|EDZ25799.1\| ribonuclease P protein component [Salmonella enterica subsp. enterica se... gi\|205350335, gi... - gi\|205350335\|gb\|EDZ36966.1\| ribonuclease P protein component [Salmonella enterica subsp. enterica se... gi\|195632089, gi... - gi\|195632089\|gb\|EDX50573.1\| ribonuclease P protein component [Salmonella enterica subsp. enterica se... RNPA_SALNS - Ribonuclease P protein component OS=Salmonella newport (strain SL254) GN=rnpA PE=3 SV=1 RNPA_SALG2 - Ribonuclease P protein component OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rnpA PE=3 ... RNPA_SALEP - Ribonuclease P protein component OS=Salmonella enteritidis PT4 (strain P125109) GN=rnpA PE=3 SV=1 gi\|213052695 - gi\|213052695\|ref\|ZP_03345573.1\| ribonuclease P [Salmonella enterica subsp. enterica serovar Typhi st... gi\|213648783 - gi\|213648783\|ref\|ZP_03378836.1\| ribonuclease P [Salmonella enterica subsp. enterica serovar Typhi st...	123.0	[0..1]	[119..1]
RNPA_ECO57 - Ribonuclease P protein component OS=Escherichia coli O157:H7 GN=rnpA PE=3 SV=1 gi\|12518543, gi\|... - gi\|15804298\|ref\|NP_290337.1\| ribonuclease P [Escherichia coli O157:H7 EDL933], gi\|12518543\|gb\|AAG589... gi\|13364114, gi\|... - gi\|15833893\|ref\|NP_312666.1\| ribonuclease P [Escherichia coli O157:H7 str. Sakai], gi\|13364114\|dbj\|B... gi\|208739636, gi... - gi\|208819513\|ref\|ZP_03259833.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC40... gi\|209754090, gi... - pir\|\|A86055 hypothetical protein rnpA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208813040, gi... - gi\|208813040\|ref\|ZP_03254369.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC40... gi\|208726197, gi... - gi\|208806396\|ref\|ZP_03248733.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC42... gi\|168798741, gi... - gi\|189378731\|gb\|EDU97147.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC508], ... gi\|217322271, gi... - gi\|217326050\|ref\|ZP_03442134.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. TW14... RNPA_ECO5E - Ribonuclease P protein component OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rnpA PE=3 SV=... gi\|168748578, gi... - gi\|188016991\|gb\|EDU55113.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC4113],... gi\|168786536, gi... - gi\|189373418\|gb\|EDU91834.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC869], ... gi\|189002536, gi... - gi\|189002536\|gb\|EDU71522.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC4076],... gi\|168772259, gi... - gi\|187771399\|gb\|EDU35243.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC4196],... gi\|168753595, gi... - gi\|189359348\|gb\|EDU77767.1\| ribonuclease P protein component [Escherichia coli O157:H7 str. EC4401],... gi\|254795707, gi... - gi\|254795707\|ref\|YP_003080544.1\| protein C5 component of RNase P [Escherichia coli O157:H7 str. TW14...	123.0	[0..1]	[119..1]
RNPA_ECOL6 - Ribonuclease P protein component OS=Escherichia coli O6 GN=rnpA PE=3 SV=1 RNPA_ECOL6 - Ribonuclease P protein component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=r...	122.0	[0..1]	[118..1]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLAFPREL RLLTPSQFTF VFQQPQRAGT PQITILGRLN SLGHPRIGLT VAKKNVRRAH  60
   61 ERNRIKRLTR ESFRLRQHEL PAMDFVVVAK KGVADLDNRA LSEALEKLWR RHCRLARGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1d6tA
Description:	RNase P protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tRNA-specific ribonuclease activity	6.1454778021122	bayes_pls_golite062009
ribonuclease P activity	5.34408239201797	bayes_pls_golite062009
structural constituent of ribosome	3.49304472389303	bayes_pls_golite062009
RNA binding	2.94550290381601	bayes_pls_golite062009
structural molecule activity	2.91017901273919	bayes_pls_golite062009
3'-5'-exoribonuclease activity	2.16830676862423	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.94887328847363	bayes_pls_golite062009
exoribonuclease activity	1.90081280972069	bayes_pls_golite062009
mRNA binding	1.42024615739664	bayes_pls_golite062009
ribonuclease activity	1.31550811238109	bayes_pls_golite062009
transcription regulator activity	1.20748032530392	bayes_pls_golite062009
nucleic acid binding	1.05662964529454	bayes_pls_golite062009
binding	0.907487229190259	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
DNA binding	0.828609700556836	bayes_pls_golite062009
nuclease activity	0.69721312877891	bayes_pls_golite062009
3'-5' exonuclease activity	0.477960254167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: