YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167469639
Organism:	Yersinia pestis FV-1
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167469639.

Description	E-value	Query Range	Subject Range
gi\|153948155, gi... - gi\|77629791\|ref\|ZP_00792377.1\| COG3111: Uncharacterized conserved protein [Yersinia pseudotuberculos... gi\|170023639, gi... - gi\|170023639\|ref\|YP_001720144.1\| hypothetical protein YPK_1397 [Yersinia pseudotuberculosis YPIII], ...	2.0E-48	[1..137]	[1..137]
gi\|77974591, gi\|... - gi\|77974591\|ref\|ZP_00830130.1\| COG3111: Uncharacterized conserved protein [Yersinia frederiksenii AT...	4.0E-47	[1..137]	[1..137]
gi\|238783889, gi... - gi\|77959009\|ref\|ZP_00823034.1\| COG3111: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	7.0E-46	[1..137]	[1..137]
gi\|25325125, gi\|... - gi\|25325125\|pir\|\|AH0888 probable exported protein [imported] - Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=ygiW] [protein=putative outer membrane protein] [protein_id=YP_005239347.1] [location=compleme... gi\|161365529, gi... - gi\|161616165\|ref\|YP_001590129.1\| hypothetical protein SPAB_03967 [Salmonella enterica subsp. enteric... gi\|198245150, gi... - gi\|198245150\|ref\|YP_002217154.1\| hypothetical protein SeD_A3527 [Salmonella enterica subsp. enterica... gi\|199604028, gi... - gi\|200386930\|ref\|ZP_03213542.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|207858435, gi... - gi\|207858435\|ref\|YP_002245086.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|213027200 - gi\|213027200\|ref\|ZP_03341647.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|194459096, gi... - gi\|194472732\|ref\|ZP_03078716.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197212865, gi... - gi\|197249162\|ref\|YP_002148103.1\| hypothetical protein SeAg_B3357 [Salmonella enterica subsp. enteric... gi\|197261599, gi... - gi\|197261599\|ref\|ZP_03161673.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197364046, gi... - gi\|197364046\|ref\|YP_002143683.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|195633417, gi... - gi\|195633417\|gb\|EDX51831.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343328, gi... - gi\|205343328\|gb\|EDZ30092.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|62181690, gi\|... - gi\|62181690\|ref\|YP_218107.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|194442987, gi... - gi\|194442987\|ref\|YP_002042441.1\| hypothetical protein SNSL254_A3432 [Salmonella enterica subsp. ente... gi\|56129374, gi\|... - gi\|56415117\|ref\|YP_152192.1\| hypothetical protein SPA3045 [Salmonella enterica subsp. enterica serov... gi\|194449571, gi... - gi\|194449571\|ref\|YP_002047172.1\| hypothetical protein SeHA_C3426 [Salmonella enterica subsp. enteric... gi\|167990274, gi... - gi\|205331066\|gb\|EDZ17830.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205333825, gi... - gi\|205333825\|gb\|EDZ20589.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205337742, gi... - gi\|205337742\|gb\|EDZ24506.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205348601, gi... - gi\|205348601\|gb\|EDZ35232.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16761952 - gi\|16761952\|ref\|NP_457569.1\| hypothetical protein STY3353 [Salmonella enterica subsp. enterica serov... gi\|16421732, gi\|... - gi\|16766476\|ref\|NP_462091.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164217... gi\|29143439, gi\|... - gi\|29143439\|ref\|NP_806781.1\| hypothetical protein t3097 [Salmonella enterica subsp. enterica serovar... gi\|213973980 - gi\|213973980\|ref\|ZP_03401239.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|214001848 - gi\|214001848\|ref\|ZP_03412583.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|224584976, gi... - gi\|224584976\|ref\|YP_002638775.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|213052529 - gi\|213052529\|ref\|ZP_03345407.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213424349 - gi\|213424349\|ref\|ZP_03357173.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213581573 - gi\|213581573\|ref\|ZP_03363399.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213647442 - gi\|213647442\|ref\|ZP_03377495.1\| possible exported protein [Salmonella enterica subsp. enterica serov...	9.0E-44	[1..136]	[1..128]
gi\|237706226, gi... - gi\|237706226\|ref\|ZP_04536707.1\| ygiW [Escherichia sp. 3_2_53FAA], gi\|226899266\|gb\|EEH85525.1\| ygiW [... gi\|254038193, gi... - gi\|254038193\|ref\|ZP_04872251.1\| ygiW [Escherichia sp. 1_1_43], gi\|226839817\|gb\|EEH71838.1\| ygiW [Esc... gi\|91212441, gi\|... - gi\|91212441\|ref\|YP_542427.1\| hypothetical protein UTI89_C3449 [Escherichia coli UTI89], gi\|91074015\|...	2.0E-43	[1..136]	[20..147]
gi\|26249594, gi\|... - gi\|26249594\|ref\|NP_755634.1\| hypothetical protein c3763 [Escherichia coli CFT073], gi\|26110002\|gb\|AA...	2.0E-43	[1..136]	[20..147]
gi\|37525341, gi\|... - gi\|37525341\|ref\|NP_928685.1\| hypothetical protein plu1385 [Photorhabdus luminescens subsp. laumondii...	3.0E-43	[1..136]	[2..138]
gi\|110616466, gi... - gi\|110806918\|ref\|YP_690438.1\| hypothetical protein SFV_3070 [Shigella flexneri 5 str. 8401], gi\|1106... YGIW_ECOLI - Protein ygiW precursor - Escherichia coli gi\|15833160, gi\|... - gi\|15833160\|ref\|NP_311933.1\| hypothetical protein ECs3906 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110643265, gi... - gi\|110643265\|ref\|YP_670995.1\| protein YgiW precursor [Escherichia coli 536], gi\|110344857\|gb\|ABG7109... gi\|208733829, gi... - gi\|208812552\|ref\|ZP_03253881.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|208741807, gi... - gi\|208821684\|ref\|ZP_03262004.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|209159281, gi... - gi\|209397881\|ref\|YP_002272498.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 ... gi\|209920496, gi... - gi\|209920496\|ref\|YP_002294580.1\| hypothetical protein ECSE_3305 [Escherichia coli SE11], gi\|20991375... gi\|217327217, gi... - gi\|217327217\|ref\|ZP_03443300.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|218555594, gi... - gi\|218555594\|ref\|YP_002388507.1\| hypothetical protein ECIAI1_3172 [Escherichia coli IAI1], gi\|218362... gi\|218366870, gi... - gi\|218560101\|ref\|YP_002393014.1\| hypothetical protein ECS88_3410 [Escherichia coli S88], gi\|21836687... gi\|218691321, gi... - gi\|218691321\|ref\|YP_002399533.1\| hypothetical protein ECED1_3681 [Escherichia coli ED1a], gi\|2184288... gi\|168781896, gi... - gi\|189000580\|gb\|EDU69566.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189374107, gi... - gi\|189374107\|gb\|EDU92523.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379769, gi... - gi\|189379769\|gb\|EDU98185.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170018722, gi... - gi\|170018722\|ref\|YP_001723676.1\| hypothetical protein EcolC_0673 [Escherichia coli ATCC 8739], gi\|16... gi\|170082567, gi... - gi\|170082567\|ref\|YP_001731887.1\| hypothetical protein ECDH10B_3198 [Escherichia coli str. K-12 subst... gi\|194431636, gi... - gi\|194431636\|ref\|ZP_03063927.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|195937166 - gi\|195937166\|ref\|ZP_03082548.1\| hypothetical protein EscherichcoliO157_12056 [Escherichia coli O157:... gi\|208726817, gi... - gi\|208807016\|ref\|ZP_03249353.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|218696730, gi... - gi\|218696730\|ref\|YP_002404397.1\| hypothetical protein EC55989_3440 [Escherichia coli 55989], gi\|2183... gi\|218371782, gi... - gi\|218701796\|ref\|YP_002409425.1\| hypothetical protein ECIAI39_3519 [Escherichia coli IAI39], gi\|2183... gi\|218706651, gi... - gi\|218706651\|ref\|YP_002414170.1\| hypothetical protein ECUMN_3509 [Escherichia coli UMN026], gi\|21843... gi\|82545282, gi\|... - gi\|82545282\|ref\|YP_409229.1\| hypothetical protein SBO_2883 [Shigella boydii Sb227], gi\|81246693\|gb\|A... gi\|89109794, gi\|... - gi\|89109794\|ref\|AP_003574.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|115514454, gi... - gi\|117625330\|ref\|YP_854599.1\| hypothetical protein APECO1_3397 [Escherichia coli APEC O1], gi\|115514... gi\|192959366, gi... - gi\|75239399\|ref\|ZP_00723370.1\| COG3111: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|124526062, gi... - gi\|124526062\|ref\|ZP_01698067.1\| conserved hypothetical protein 156 [Escherichia coli B], gi\|12450216... gi\|190907203, gi... - gi\|75240521\|ref\|ZP_00724449.1\| COG3111: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|194426466, gi... - gi\|75212337\|ref\|ZP_00712361.1\| COG3111: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|190902398, gi... - gi\|75229295\|ref\|ZP_00715854.1\| COG3111: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|73857040, gi\|... - gi\|74313563\|ref\|YP_311982.1\| hypothetical protein SSON_3163 [Shigella sonnei Ss046], gi\|73857040\|gb\|... gi\|82778366, gi\|... - gi\|82778366\|ref\|YP_404715.1\| hypothetical protein SDY_3215 [Shigella dysenteriae Sd197], gi\|81242514... gi\|75259963, gi\|... - gi\|75259963\|ref\|ZP_00731241.1\| COG3111: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|188490380, gi... - gi\|75515182\|ref\|ZP_00737366.1\| COG3111: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|188017959, gi... - gi\|188017959\|gb\|EDU56081.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|157157531, gi... - gi\|75187840\|ref\|ZP_00701107.1\| COG3111: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|189358549, gi... - gi\|189358549\|gb\|EDU76968.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|75196982, gi\|... - gi\|75196982\|ref\|ZP_00707052.1\| COG3111: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|189369221, gi... - gi\|189369221\|gb\|EDU87637.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|194424397, gi... - gi\|83587534\|ref\|ZP_00926161.1\| COG3111: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|168767043, gi... - gi\|189363876\|gb\|EDU82295.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|75178925, gi\|... - gi\|75178925\|ref\|ZP_00698961.1\| COG3111: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|168773323, gi... - gi\|187770799\|gb\|EDU34643.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... EG13025 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein / Hydro... YGIW_ECO57 - Protein YgiW OS=Escherichia coli O157:H7 GN=ygiW PE=3 SV=1 gi\|15803566, gi\|... - gi\|15803566\|ref\|NP_289599.1\| hypothetical protein Z4376 [Escherichia coli O157:H7 EDL933], gi\|125175... EG13025 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein / Hydro... gi\|238860378, gi... - gi\|238902137\|ref\|YP_002927933.1\| hypothetical protein BWG_2737 [Escherichia coli BW2952], gi\|2388603... gi\|242378576, gi... - gi\|251786303\|ref\|YP_003000607.1\| hypothetical protein B21_02846 [Escherichia coli BL21], gi\|24237857... gi\|253979030, gi... - gi\|254289723\|ref\|YP_003055471.1\| hypothetical protein ECD_02896 [Escherichia coli BL21(DE3)], gi\|253... gi\|253974874, gi... - gi\|254162973\|ref\|YP_003046081.1\| hypothetical protein ECB_02896 [Escherichia coli B str. REL606], gi... gi\|254794976, gi... - gi\|254794976\|ref\|YP_003079813.1\| hypothetical protein ECSP_3998 [Escherichia coli O157:H7 str. TW143...	5.0E-43	[1..136]	[1..128]
gi\|30042631, gi\|... - gi\|30064374\|ref\|NP_838545.1\| hypothetical protein S3269 [Shigella flexneri 2a str. 2457T], gi\|300426... gi\|56480242, gi\|... - gi\|56480242\|ref\|NP_708836.2\| hypothetical protein SF3065 [Shigella flexneri 2a str. 301], gi\|5638379...	8.0E-43	[1..136]	[1..128]
gi\|77960163 - gi\|77960163\|ref\|ZP_00824051.1\| COG3111: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	5.0E-41	[11..137]	[1..127]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTLAATL IMLCGTPVLA QSASNTTQGG FDGPATTQTQ PATQGGFTGP SASSTTVDKV  60
   61 KTMRDDARVT LQGYIEARLG HDTYTFRDST GTITVEIDDK RWRGQTITPQ DKVQIEGKVD 120
  121 KDWNSVEIDV KNITKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1nnxA
Description:	Structure of the hypothetical protein ygiW from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits