YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167420698, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167420698, gi....

Description	E-value	Query Range	Subject Range
gi\|77957549, gi\|... - gi\|77957549\|ref\|ZP_00821602.1\| COG1586: S-adenosylmethionine decarboxylase [Yersinia bercovieri ATCC...	432.0	[0..1]	[264..1]
gi\|238786760, gi... - gi\|77976065\|ref\|ZP_00831598.1\| COG1586: S-adenosylmethionine decarboxylase [Yersinia frederiksenii A...	432.0	[0..1]	[264..1]
SPED_YERPS - S-adenosylmethionine decarboxylase proenzyme OS=Yersinia pseudotuberculosis serotype I (strain IP329... SPED_YERPS - S-adenosylmethionine decarboxylase proenzyme OS=Yersinia pseudotuberculosis GN=speD PE=3 SV=1	431.0	[0..1]	[264..1]
SPED_SHIFL - S-adenosylmethionine decarboxylase proenzyme OS=Shigella flexneri GN=speD PE=3 SV=1 gi\|24111563, gi\|... - gi\|24111563\|ref\|NP_706073.1\| S-adenosylmethionine decarboxylase [Shigella flexneri 2a str. 301], gi\|... gi\|30061685, gi\|... - gi\|30061685\|ref\|NP_835856.1\| S-adenosylmethionine decarboxylase [Shigella flexneri 2a str. 2457T], g... SPED_ECO57 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O157:H7 GN=speD PE=3 SV=1 EG10962 - S-adenosylmethionine decarboxylase / S-adenosylmethionine decarboxylase, spermidine biosynthesis; tw... gi\|15799804, gi\|... - gi\|15799804\|ref\|NP_285816.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 EDL933], g... SPED_ECOBW - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=s... gi\|251783680, gi... - gi\|251783680\|ref\|YP_002997984.1\| hypothetical protein B21_00118 [Escherichia coli BL21], gi\|24237595... gi\|253325896, gi... - gi\|254287043\|ref\|YP_003052791.1\| S-adenosylmethionine decarboxylase proenzyme [Escherichia coli BL21... gi\|254037536, gi... - gi\|254037536\|ref\|ZP_04871613.1\| S-adenosylmethionine decarboxylase [Escherichia sp. 1_1_43], gi\|2268... gi\|253972141, gi... - gi\|254160240\|ref\|YP_003043348.1\| S-adenosylmethionine decarboxylase proenzyme [Escherichia coli B st... gi\|254791255, gi... - gi\|254791255\|ref\|YP_003076092.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. T... EG10962 - S-adenosylmethionine decarboxylase / S-adenosylmethionine decarboxylase, spermidine biosynthesis; tw... gi\|124530582, gi... - gi\|124530582\|ref\|ZP_01701185.1\| Adenosylmethionine decarboxylase [Escherichia coli B], gi\|124499109\|... gi\|15829378, gi\|... - gi\|15829378\|ref\|NP_308151.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. Sakai... SPED_SHIF8 - S-adenosylmethionine decarboxylase proenzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=speD ... SPED_SHIBS - S-adenosylmethionine decarboxylase proenzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=speD PE... gi\|21238973, gi\|... - gi\|89107001\|ref\|AP_000781.1\| S-adenosylmethionine decarboxylase [Escherichia coli str. K-12 substr. ... SPED_ECOLC - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Croo... SPED_ECOHS - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O9:H4 (strain HS) GN=speD PE=3 SV=1 gi\|75210447, gi\|... - gi\|75210447\|ref\|ZP_00710598.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli B171], ... SPED_SHIB3 - S-adenosylmethionine decarboxylase proenzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS... SPED_ECO24 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN... gi\|188489604, gi... - gi\|75511995\|ref\|ZP_00734590.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli 53638],... SPED_SHISS - S-adenosylmethionine decarboxylase proenzyme OS=Shigella sonnei (strain Ss046) GN=speD PE=3 SV=1 gi\|190903623, gi... - gi\|75230518\|ref\|ZP_00716999.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli B7A], g... gi\|75258887, gi\|... - gi\|75258887\|ref\|ZP_00730277.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli E22], g... gi\|194433450, gi... - gi\|83569701\|ref\|ZP_00921151.1\| COG1586: S-adenosylmethionine decarboxylase [Shigella dysenteriae 101... gi\|189357075, gi... - gi\|189357075\|gb\|EDU75494.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC4401... gi\|194439137, gi... - gi\|83585439\|ref\|ZP_00924084.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli 101-1],... gi\|189360705, gi... - gi\|189360705\|gb\|EDU79124.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC4486... gi\|168764738, gi... - gi\|189365315\|gb\|EDU83731.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC4501... SPED_ECO5E - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=s... gi\|208820445, gi... - gi\|208820445\|ref\|ZP_03260765.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC... gi\|217325443, gi... - gi\|217325443\|ref\|ZP_03441527.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. TW... gi\|209917311, gi... - gi\|209917311\|ref\|YP_002291395.1\| S-adenosylmethionine decarboxylase [Escherichia coli SE11], gi\|2099... SPED_ECO55 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli (strain 55989 / EAEC) GN=speD PE=3 ... SPED_ECO8A - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O8 (strain IAI1) GN=speD PE=3 SV=1 SPED_ECOLU - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)... SPED_ECO7I - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=spe... SPED_ECOLI - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains: S-adenosylm... gi\|168782009, gi... - gi\|189000494\|gb\|EDU69480.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC4076... gi\|187767836, gi... - gi\|187767836\|gb\|EDU31680.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC4196... SPED_ECODH - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli (strain K12 / DH10B) GN=speD PE=3 S... gi\|189376386, gi... - gi\|189376386\|gb\|EDU94802.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC508]... gi\|195938198 - gi\|195938198\|ref\|ZP_03083580.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC... SPED_ECOSM - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=speD PE... gi\|208812381, gi... - gi\|208812381\|ref\|ZP_03253710.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC... gi\|208726300, gi... - gi\|208806499\|ref\|ZP_03248836.1\| S-adenosylmethionine decarboxylase [Escherichia coli O157:H7 str. EC...	430.0	[0..1]	[264..1]
SPED_SHIDS - S-adenosylmethionine decarboxylase proenzyme OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=sp...	429.0	[0..1]	[264..1]
SPED_ECOUT - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=speD PE=3 ... SPED_ECOL5 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=s... SPED_ECO45 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=speD... gi\|227884969, gi... - gi\|227884969\|ref\|ZP_04002774.1\| S-adenosylmethionine decarboxylase [Escherichia coli 83972], gi\|2278... gi\|226902188, gi... - gi\|237704276\|ref\|ZP_04534757.1\| adenosylmethionine decarboxylase [Escherichia sp. 3_2_53FAA], gi\|226... gi\|190906899, gi... - gi\|75240288\|ref\|ZP_00724235.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli F11], g... SPED_ECOL6 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... SPED_ECOL6 - S-adenosylmethionine decarboxylase proenzyme OS=Escherichia coli O6 GN=speD PE=3 SV=1	429.0	[0..1]	[264..1]
gi\|192955451, gi... - gi\|75233847\|ref\|ZP_00718317.1\| COG1586: S-adenosylmethionine decarboxylase [Escherichia coli E110019...	429.0	[0..1]	[264..1]
SPED_SALDC - S-adenosylmethionine decarboxylase proenzyme OS=Salmonella dublin (strain CT_02021853) GN=speD PE=3 ... SPED_SALPK - S-adenosylmethionine decarboxylase proenzyme OS=Salmonella paratyphi A (strain AKU_12601) GN=speD PE... SPED_SALPA - S-adenosylmethionine decarboxylase proenzyme OS=Salmonella paratyphi A GN=speD PE=3 SV=1 SPED_SALPA - S-adenosylmethionine decarboxylase proenzyme OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) G... SPED_SALEP - S-adenosylmethionine decarboxylase proenzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=speD ...	429.0	[0..1]	[264..1]
gi\|77962781, gi\|... - gi\|77962781\|ref\|ZP_00826597.1\| COG1586: S-adenosylmethionine decarboxylase [Yersinia mollaretii ATCC...	428.0	[0..1]	[264..1]
gi\|77977269, gi\|... - gi\|77977269\|ref\|ZP_00832722.1\| COG1586: S-adenosylmethionine decarboxylase [Yersinia intermedia ATCC...	428.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLKLHGFN NLTKSLSFCI YDICYAKTAD DRDGYIAYID EQYNANRLTE ILSETCSIIG  60
   61 ANILNIARQD YDPQGASVTI LVSEEPVDPR DVDTSEHPGP LPSAVVAHLD KSHICVHTYP 120
  121 ESHPEAGLCT FRADIEVSTC GVISPLKALN YLIHQLESDI VTMDYRVRGF TRDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1vr7A
Description:	Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from THERMOTOGA MARITIMA at 1.2 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [175-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGVKHFIDHK INSIQNFMSD DMKSLYHMMD VNVYQENIFH TKMMLKDFDL KHYLFNAKPE  60
   61 ELSAEEKEQI TRLLYKEMQE IYYGRNVPEV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits