YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170023628, gi...
Organism:	Yersinia pseudotuberculosis YPIII
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170023628, gi....

Description	E-value	Query Range	Subject Range
gi\|62128468, gi\|... - gi\|62180835\|ref\|YP_217252.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica sero...	1.0E-27	[5..88]	[93..176]
gi\|21958221, gi\|... - gi\|22125341\|ref\|NP_668764.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis KIM... gi\|45442438, gi\|... - gi\|45442438\|ref\|NP_993977.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis bio...	2.0E-26	[1..88]	[3..90]
gi\|77960880 - gi\|77960880\|ref\|ZP_00824734.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	1.0E-25	[1..88]	[1..88]
gi\|77958999 - gi\|77958999\|ref\|ZP_00823024.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	1.0E-25	[1..88]	[1..88]
gi\|77974600 - gi\|77974600\|ref\|ZP_00830139.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	3.0E-25	[1..88]	[1..88]
gi\|77977007 - gi\|77977007\|ref\|ZP_00832469.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	2.0E-24	[1..88]	[1..88]
gi\|112823693, gi... - gi\|113461650\|ref\|YP_719719.1\| periplasmic nitrate reductase chaperone NapD [Haemophilus somnus 129PT...	2.0E-24	[3..86]	[74..156]
gi\|32028783 - gi\|32028783\|ref\|ZP_00131919.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	9.0E-23	[3..86]	[36..118]
gi\|15603458, gi\|... - gi\|15603458\|ref\|NP_246532.1\| NapD [Pasteurella multocida subsp. multocida str. Pm70], gi\|12721989\|gb...	2.0E-21	[3..84]	[10..91]
gi\|197263331, gi... - gi\|197263331\|ref\|ZP_03163405.1\| NapD protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|194451213, gi... - gi\|194451213\|ref\|YP_002046315.1\| assembly protein for periplasmic nitrate reductase [Salmonella ente... gi\|168242371, gi... - gi\|205338352\|gb\|EDZ25116.1\| NapD protein [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|167992591, gi... - gi\|205329186\|gb\|EDZ15950.1\| NapD protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|238913918 - gi\|238913918\|ref\|ZP_04657755.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|213161893 - gi\|213161893\|ref\|ZP_03347603.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|206709483, gi... - gi\|207857680\|ref\|YP_002244331.1\| assembly protein for periplasmic nitrate reductase [Salmonella ente... gi\|205353378, gi... - gi\|205353378\|ref\|YP_002227179.1\| assembly protein for periplasmic nitrate reductase [Salmonella ente... gi\|199604200, gi... - gi\|200387102\|ref\|ZP_03213714.1\| NapD protein [Salmonella enterica subsp. enterica serovar Virchow st... lcl\|NC_016856.1_... - [gene=napD] [protein=assembly protein for periplasmic nitrate reductase] [protein_id=YP_005238326.1]... gi\|161362389, gi... - gi\|161613025\|ref\|YP_001586990.1\| assembly protein for periplasmic nitrate reductase [Salmonella ente... gi\|25303109, gi\|... - gi\|25303109\|pir\|\|AB0789 probable napAB assembly protein STY2486 [imported] - Salmonella enterica sub... gi\|16765588, gi\|... - gi\|16765588\|ref\|NP_461203.1\| assembly protein for periplasmic nitrate reductase [Salmonella typhimur... gi\|213618921 - gi\|213618921\|ref\|ZP_03372747.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|213584338 - gi\|213584338\|ref\|ZP_03366164.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|29141118, gi\|... - gi\|29141118\|ref\|NP_804460.1\| assembly protein for periplasmic nitrate reductase [Salmonella enterica... gi\|213426904 - gi\|213426904\|ref\|ZP_03359654.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|16761188 - gi\|16761188\|ref\|NP_456805.1\| assembly protein for periplasmic nitrate reductase [Salmonella enterica... gi\|213418745 - gi\|213418745\|ref\|ZP_03351811.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|224467780, gi... - gi\|224583253\|ref\|YP_002637051.1\| putative napAB assembly protein [Salmonella enterica subsp. enteric... gi\|214003437 - gi\|214003437\|ref\|ZP_03414172.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|213852148 - gi\|213852148\|ref\|ZP_03381680.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s... gi\|213646505 - gi\|213646505\|ref\|ZP_03376558.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica s...	2.0E-21	[5..88]	[4..87]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDNEWHVCG LVLQAKPARF VQLMDHLLAI PGTEIPTSDP ALGKLVVVMQ AARSDTLLNH  60
   61 IESARNLDGV LAVSLVYHQQ DLQGEEMP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2jsxA
Description:	No description for 2jsxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits