YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166009043, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166009043, gi....

Description	E-value	Query Range	Subject Range
Q66EW5\|Q66EW5_YERPS - Hyperosmotically inducible periplasmic protein, RpoS-dependent stationary phase gene precursor - Yer... gi\|153947880, gi... - gi\|77631562\|ref\|ZP_00794148.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia pseu... gi\|169752381, gi... - gi\|170025847\|ref\|YP_001722352.1\| periplasmic protein [Yersinia pseudotuberculosis YPIII], gi\|1697523... gi\|51594927, gi\|... - gi\|51594927\|ref\|YP_069118.1\| periplasmic protein [Yersinia pseudotuberculosis IP 32953], gi\|51588209...	3.0E-40	[1..204]	[1..204]
gi\|238790075, gi... - gi\|77973615\|ref\|ZP_00829161.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia fred...	8.0E-39	[1..204]	[1..204]
gi\|77959698 - gi\|77959698\|ref\|ZP_00823715.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia berc...	3.0E-38	[1..204]	[1..204]
gi\|91075664, gi\|... - gi\|91214090\|ref\|YP_544076.1\| periplasmic protein [Escherichia coli UTI89], gi\|91075664\|gb\|ABE10545.1... gi\|226840492, gi... - gi\|254037386\|ref\|ZP_04871463.1\| periplasmic protein [Escherichia sp. 1_1_43], gi\|226840492\|gb\|EEH724... gi\|226902024, gi... - gi\|237704112\|ref\|ZP_04534593.1\| periplasmic protein [Escherichia sp. 3_2_53FAA], gi\|226902024\|gb\|EEH... gi\|26251263, gi\|... - gi\|26251263\|ref\|NP_757303.1\| periplasmic protein [Escherichia coli CFT073], gi\|26111696\|gb\|AAN83877....	7.0E-38	[1..203]	[29..227]
gi\|238910720 - gi\|238910720\|ref\|ZP_04654557.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Ten... gi\|197300648, gi... - gi\|197300648\|ref\|ZP_02659754.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|197265158, gi... - gi\|197265158\|ref\|ZP_03165232.1\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|197212802, gi... - gi\|197249099\|ref\|YP_002149502.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... gi\|195873719, gi... - gi\|195873719\|ref\|ZP_02698425.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|205331515, gi... - gi\|205357531\|ref\|ZP_02570901.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|205355281, gi... - gi\|205355281\|ref\|YP_002229082.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Ga... gi\|204927345, gi... - gi\|204927345\|ref\|ZP_03218547.1\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|197939235, gi... - gi\|198244719\|ref\|YP_002218436.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... gi\|161617872, gi... - gi\|161617872\|ref\|YP_001591837.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Pa... gi\|194713397, gi... - gi\|194737895\|ref\|YP_002117476.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... gi\|194458140, gi... - gi\|194471776\|ref\|ZP_03077760.1\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|194450892, gi... - gi\|194450892\|ref\|YP_002048581.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar He... gi\|194403648, gi... - gi\|194444985\|ref\|YP_002043802.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=osmY] [protein=hypothetical protein] [protein_id=YP_005240904.1] [location=4828712..4829329] gi\|214002589 - gi\|214002589\|ref\|ZP_03413324.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213854146 - gi\|213854146\|ref\|ZP_03382678.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213650115 - gi\|213650115\|ref\|ZP_03380168.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|207859687, gi... - gi\|207859687\|ref\|YP_002246338.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar En... gi\|205348961, gi... - gi\|205360578\|ref\|ZP_02684360.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|25512632, gi\|... - gi\|25512632\|pir\|\|AE1072 Putative periplasmic protein [imported] - Salmonella enterica subsp. enteric... gi\|205336631, gi... - gi\|205359367\|ref\|ZP_02669475.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|205335056, gi... - gi\|205358335\|ref\|ZP_02655264.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|29144834, gi\|... - gi\|29144834\|ref\|NP_808176.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213613230 - gi\|213613230\|ref\|ZP_03371056.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|16767802, gi\|... - gi\|16767802\|ref\|NP_463417.1\| periplasmic protein [Salmonella typhimurium LT2], gi\|16423126\|gb\|AAL233... gi\|213581436 - gi\|213581436\|ref\|ZP_03363262.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213427565 - gi\|213427565\|ref\|ZP_03360315.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|16763356 - gi\|16763356\|ref\|NP_458973.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213417862 - gi\|213417862\|ref\|ZP_03350964.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ...	1.0E-36	[1..203]	[3..205]
gi\|62182979, gi\|... - gi\|62182979\|ref\|YP_219396.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Choler...	2.0E-36	[1..203]	[3..205]
gi\|197096735, gi... - gi\|197365258\|ref\|YP_002144895.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Pa... gi\|56130592, gi\|... - gi\|56416335\|ref\|YP_153410.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Paraty...	2.0E-36	[1..203]	[3..205]
gi\|77977219 - gi\|77977219\|ref\|ZP_00832674.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia inte...	4.0E-36	[11..204]	[2..195]
gi\|77960332 - gi\|77960332\|ref\|ZP_00824209.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia moll...	1.0E-35	[11..204]	[1..194]
gi\|15834588, gi\|... - gi\|15834588\|ref\|NP_313361.1\| periplasmic protein [Escherichia coli O157:H7 str. Sakai], gi\|13364812\|... gi\|209748938, gi... - pir\|\|F91295 hyperosmotically inducible periplasmic protein [imported] - Escherichia coli (strain O15... gi\|254796371, gi... - gi\|254796371\|ref\|YP_003081208.1\| periplasmic protein [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|217325769, gi... - gi\|217325769\|ref\|ZP_03441853.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. TW145... gi\|208733588, gi... - gi\|208812311\|ref\|ZP_03253640.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC404... gi\|208728595, gi... - gi\|208808794\|ref\|ZP_03251131.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC420... gi\|209398467, gi... - gi\|209398467\|ref\|YP_002273896.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC41... gi\|208740775, gi... - gi\|208820652\|ref\|ZP_03260972.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC404... gi\|189374722, gi... - gi\|189404591\|ref\|ZP_02810025.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC869... gi\|189404198, gi... - gi\|189404198\|ref\|ZP_02787733.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC450... gi\|195937647 - gi\|195937647\|ref\|ZP_03083029.1\| periplasmic protein [Escherichia coli O157:H7 str. EC4024] gi\|189405596, gi... - gi\|189405596\|ref\|ZP_02822954.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC508... gi\|189010379, gi... - gi\|189010379\|ref\|ZP_02806671.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC407... gi\|188014908, gi... - gi\|188025091\|ref\|ZP_02776010.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC411... gi\|15834588, gi\|... - gi\|15834588\|ref\|NP_313361.1\| hyperosmotically inducible periplasmic protein [Escherichia coli O157:H... gi\|189402832, gi... - gi\|189402832\|ref\|ZP_02791663.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC448... gi\|189356062, gi... - gi\|189402347\|ref\|ZP_02781800.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC440... gi\|187768020, gi... - gi\|187776283\|ref\|ZP_02801654.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC419...	2.0E-34	[1..203]	[3..201]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTQFSRSV MAVVLGSALI SGSVLAEDTL LNKAASTVDS TGAKIDSSMK KVDNYMSDSA  60
   61 VTAKVKSALL EEKSLKSTDI SVETSNGVVT LSGFLNSQAE IETAVEIAGN VEGVKSVSDK 120
  121 LHVKDQKSQS VSEYAGDAAT TSSVKAKLLA DDIVPSRKIK VETTDGVVQL SGDVENKAQS 180
  181 ERAESIAKAV NGVKSVKNDL NIKP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.977
Match:	1shsA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits