YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166008763, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166008763, gi....

Description	E-value	Query Range	Subject Range
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	1.0E-61	[1..238]	[1..238]
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	2.0E-61	[1..238]	[1..238]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	2.0E-61	[1..239]	[1..239]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	4.0E-61	[1..239]	[1..239]
gi\|77960324 - gi\|77960324\|ref\|ZP_00824201.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia mollaretii ATCC 43...	7.0E-61	[1..239]	[1..239]
DEOD_YERPB - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) ... DEOD_YERP3 - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31... DEOD_YERPY - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII)... DEOD_YERPS - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype I (strain IP32953)... DEOD_YERPS - Purine nucleoside phosphorylase deoD-type OS=Yersinia pseudotuberculosis GN=deoD PE=3 SV=1	1.0E-60	[1..239]	[1..239]
DEOD_PECAS - Purine nucleoside phosphorylase DeoD-type OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BA... DEOD_ERWCT - Purine nucleoside phosphorylase deoD-type OS=Erwinia carotovora subsp. atroseptica GN=deoD PE=3 SV=1	3.0E-60	[1..238]	[1..238]
gi\|21960722, gi\|... - gi\|22127612\|ref\|NP_671035.1\| purine nucleoside phosphorylase [Yersinia pestis KIM], gi\|21960722\|gb\|A... gi\|45438343, gi\|... - gi\|45443474\|ref\|NP_995013.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Microtus str. 9...	4.0E-60	[1..239]	[3..241]
gi\|77977211 - gi\|77977211\|ref\|ZP_00832666.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia intermedia ATCC 29...	5.0E-60	[1..237]	[1..237]
gi\|227885127, gi... - gi\|227885127\|ref\|ZP_04002932.1\| purine-nucleoside phosphorylase [Escherichia coli 83972], gi\|2278379... gi\|26111707, gi\|... - gi\|26251274\|ref\|NP_757314.1\| purine nucleoside phosphorylase [Escherichia coli CFT073], gi\|26111707\|...	6.0E-60	[1..238]	[20..257]

Back

Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPHINAEM GDFADVVLMP GDPLRAKFIA ETFLQDVREV NNVRGMLGFT GTYKGRKISV  60
   61 MGHGMGIPSC SIYAKELITD FGVKKIIRVG SCGAVRTDVK LRDVVIGMGA CTDSKVNRMR 120
  121 FKDHDYAAIA DFEMTRNAVD AAKAKGVNVR VGNLFSADLF YTPDPQMFDV MEKYGILGVE 180
  181 MEAAGICGVA AEFGAKALTI CTVSDHIRTG EQTTAAERQT TFNDMIEIAL ESVLLGDNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	1pr0A
Description:	Escherichia coli Purine Nucleoside Phosphorylase Complexed with Inosine and Phosphate/Sulfate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: