YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218770676, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218770676, gi....

Description	E-value	Query Range	Subject Range
gi\|116051366, gi... - gi\|32038451\|ref\|ZP_00136723.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	5.0E-24	[1..107]	[1..107]
gi\|49089088 - gi\|49089088\|gb\|AAT51640.1\| PA3351 [synthetic construct]	3.0E-23	[1..107]	[1..107]
gi\|152984507, gi... - gi\|94413583\|ref\|ZP_01293462.1\| hypothetical protein PaerP_01004599 [Pseudomonas aeruginosa PA7], gi\|...	8.0E-23	[1..107]	[1..107]
gi\|66046717, gi\|... - gi\|66046717\|ref\|YP_236558.1\| anti-sigma-28 factor, FlgM [Pseudomonas syringae pv. syringae B728a], g...	7.0E-20	[1..107]	[1..104]
gi\|24986119, gi\|... - gi\|26991084\|ref\|NP_746509.1\| anti-sigma-28 factor, FlgM [Pseudomonas putida KT2440], gi\|24986119\|gb\|... tr\|E4RB04\|E4RB04... - FlgM OS=Pseudomonas putida (strain BIRD-1) GN=flgM PE=4 SV=1 tr\|I7C3B2\|I7C3B2... - Anti-sigma-28 factor, FlgM OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5093 PE=4 SV=1 gi\|82737705, gi\|... - gi\|82737705\|ref\|ZP_00900551.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas putida F1...	9.0E-20	[1..107]	[1..104]
tr\|Q885B0\|Q885B0... - Negative regulator of flagellin synthesis FlgM, putative OS=Pseudomonas syringae pv. tomato (strain ... gi\|28852369, gi\|... - gi\|28869129\|ref\|NP_791748.1\| negative regulator of flagellin synthesis FlgM, putative [Pseudomonas s... gi\|213927893, gi... - gi\|213967592\|ref\|ZP_03395740.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas syringae...	4.0E-19	[1..107]	[1..104]
gi\|71736807, gi\|... - gi\|71736807\|ref\|YP_275573.1\| flagellin synthesis, negative regulator, FlgM, putative [Pseudomonas sy...	6.0E-19	[1..107]	[1..104]
gi\|95111838 - gi\|95111838\|emb\|CAK16562.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas entomophila ... gi\|104782851, gi... - gi\|95111838\|emb\|CAK16562.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas entomophila ...	3.0E-18	[1..107]	[1..104]
gi\|70731830, gi\|... - gi\|70731830\|ref\|YP_261572.1\| negative regulator of flagellin synthesis FlgM, putative [Pseudomonas f...	3.0E-18	[1..107]	[1..105]
gi\|48730656, gi\|... - gi\|77460476\|ref\|YP_349983.1\| anti-sigma-28 factor, FlgM [Pseudomonas fluorescens Pf0-1], gi\|77384479...	3.0E-17	[1..107]	[1..108]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIDFNRLNP GSTPATTGRT GSTAAGRPDA TGADKAGQAA TSAPKSGESV QISETAQNMQ  60
   61 KVTDQLQTLP VVDNDKVARI KQAIADGTYQ VDSERVASKL LDFESQR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.898156665835644	bayes_pls_golite062009
protein binding	0.114198899043901	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: