YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166211954, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166211954, gi....

Description	E-value	Query Range	Subject Range
gi\|195633422, gi... - gi\|195633422\|gb\|EDX51836.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205348458, gi... - gi\|205348458\|gb\|EDZ35089.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205333834, gi... - gi\|205333834\|gb\|EDZ20598.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205331135, gi... - gi\|205331135\|gb\|EDZ17899.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|197243685, gi... - gi\|197265430\|ref\|ZP_03165504.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enter... gi\|197248980, gi... - gi\|197248980\|ref\|YP_002148080.1\| TonB system transport protein ExbD [Salmonella enterica subsp. ente... gi\|194470085, gi... - gi\|194470085\|ref\|ZP_03076069.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enter... gi\|168819785, gi... - gi\|205343432\|gb\|EDZ30196.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|29139055, gi\|... - gi\|29143421\|ref\|NP_806763.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205323314, gi... - gi\|205323314\|gb\|EDZ11153.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|16761934 - gi\|16761934\|ref\|NP_457551.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|161616140, gi... - gi\|161616140\|ref\|YP_001590105.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enter... gi\|25301409, gi\|... - gi\|25301409\|pir\|\|AE0886 biopolymer transport ExbD protein STY3331 [imported] - Salmonella enterica s... gi\|16421713, gi\|... - gi\|16766458\|ref\|NP_462073.1\| biopolymer transport protein ExbD [Salmonella typhimurium LT2], gi\|1642... gi\|238909958 - gi\|238909958\|ref\|ZP_04653795.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=exbD] [protein=biopolymer transport protein ExbD] [protein_id=YP_005239323.1] [location=comple... gi\|207858417, gi... - gi\|207858417\|ref\|YP_002245068.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enter... gi\|200389196, gi... - gi\|200389196\|ref\|ZP_03215808.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enter... gi\|197937549, gi... - gi\|198243033\|ref\|YP_002217136.1\| TonB system transport protein ExbD [Salmonella enterica subsp. ente... gi\|197095505, gi... - gi\|197364028\|ref\|YP_002143665.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enter... gi\|213980699 - gi\|213980699\|ref\|ZP_03407958.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|213851961 - gi\|213851961\|ref\|ZP_03381493.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|213647424 - gi\|213647424\|ref\|ZP_03377477.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|213585737 - gi\|213585737\|ref\|ZP_03367563.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|62181670, gi\|... - gi\|62181670\|ref\|YP_218087.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|56129356, gi\|... - gi\|56415099\|ref\|YP_152174.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ...	3.0E-37	[1..140]	[1..140]
gi\|227835106, gi... - gi\|227887710\|ref\|ZP_04005515.1\| TolR protein [Escherichia coli 83972], gi\|227835106\|gb\|EEJ45572.1\| T... gi\|237706249, gi... - gi\|237706249\|ref\|ZP_04536730.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia sp.... gi\|238902120, gi... - gi\|238902120\|ref\|YP_002927916.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|251786286, gi... - gi\|251786286\|ref\|YP_003000590.1\| hypothetical protein B21_02829 [Escherichia coli BL21], gi\|24237855... gi\|253979013, gi... - gi\|254289706\|ref\|YP_003055454.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|254038175, gi... - gi\|254038175\|ref\|ZP_04872233.1\| biopolymer transporter ExbD [Escherichia sp. 1_1_43], gi\|226839799\|g... gi\|254162956, gi... - gi\|254162956\|ref\|YP_003046064.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|254594360, gi... - gi\|254794960\|ref\|YP_003079797.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|168747489, gi... - gi\|188017823\|gb\|EDU55945.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4113... gi\|115514432, gi... - gi\|117625308\|ref\|YP_854509.1\| biopolymer transport protein ExbD [Escherichia coli APEC O1], gi\|11551... gi\|189369413, gi... - gi\|189369413\|gb\|EDU87829.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4501... gi\|124502181, gi... - gi\|124526077\|ref\|ZP_01698082.1\| Biopolymer transport protein ExbD/TolR [Escherichia coli B], gi\|1245... gi\|168753970, gi... - gi\|189358469\|gb\|EDU76888.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4401... gi\|187770856, gi... - gi\|187770856\|gb\|EDU34700.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4196... gi\|189363760, gi... - gi\|189363760\|gb\|EDU82179.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4486... gi\|91212417, gi\|... - gi\|91212417\|ref\|YP_542403.1\| biopolymer transport protein ExbD [Escherichia coli UTI89], gi\|91073991... gi\|193062022, gi... - gi\|75259949\|ref\|ZP_00731227.1\| COG0848: Biopolymer transport protein [Escherichia coli E22], gi\|1930... gi\|75515199, gi\|... - gi\|75515199\|ref\|ZP_00737383.1\| COG0848: Biopolymer transport protein [Escherichia coli 53638], gi\|18... gi\|192959363, gi... - gi\|75239413\|ref\|ZP_00723384.1\| COG0848: Biopolymer transport protein [Escherichia coli E110019], gi\|... gi\|191172495, gi... - gi\|75240541\|ref\|ZP_00724469.1\| COG0848: Biopolymer transport protein [Escherichia coli F11], gi\|1911... gi\|85675810, gi\|... - gi\|89109777\|ref\|AP_003557.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia coli s... gi\|74313548, gi\|... - gi\|74313548\|ref\|YP_311967.1\| biopolymer transport protein ExbD [Shigella sonnei Ss046], gi\|73857025\|... gi\|82545390, gi\|... - gi\|82545390\|ref\|YP_409337.1\| biopolymer transport protein ExbD [Shigella boydii Sb227], gi\|81246801\|... gi\|83587549, gi\|... - gi\|83587549\|ref\|ZP_00926176.1\| COG0848: Biopolymer transport protein [Escherichia coli 101-1], gi\|19... gi\|75178904, gi\|... - gi\|75178904\|ref\|ZP_00698940.1\| COG0848: Biopolymer transport protein [Shigella boydii BS512], gi\|187... gi\|75212351, gi\|... - gi\|75212351\|ref\|ZP_00712375.1\| COG0848: Biopolymer transport protein [Escherichia coli B171], gi\|194... gi\|191167524, gi... - gi\|75229309\|ref\|ZP_00715868.1\| COG0848: Biopolymer transport protein [Escherichia coli B7A], gi\|1911... gi\|157080838, gi... - gi\|75187826\|ref\|ZP_00701093.1\| COG0848: Biopolymer transport protein [Escherichia coli E24377A], gi\|... EXBD_SHIFL - Biopolymer transport protein ExbD OS=Shigella flexneri GN=exbD PE=3 SV=1 gi\|157068163, gi... - gi\|75196967\|ref\|ZP_00707037.1\| COG0848: Biopolymer transport protein [Escherichia coli HS], gi\|15716... EG10272 - membrane spanning protein in TonB-ExbB-ExbD complex / Uptake of enterochelin; resistance or sensitiv... gi\|24053469, gi\|... - gi\|24114311\|ref\|NP_708821.1\| biopolymer transport protein ExbD [Shigella flexneri 2a str. 301], gi\|2... EXBD_ECOL6 - Biopolymer transport protein ExbD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... EXBD_ECOL6 - Biopolymer transport protein exbD OS=Escherichia coli O6 GN=exbD PE=3 SV=1 gi\|30042616, gi\|... - gi\|30064359\|ref\|NP_838530.1\| biopolymer transport protein ExbD [Shigella flexneri 2a str. 2457T], gi... EXBD_ECO57 - Biopolymer transport protein ExbD OS=Escherichia coli O157:H7 GN=exbD PE=3 SV=1 EG10272 - membrane spanning protein in TonB-ExbB-ExbD complex / Uptake of enterochelin; resistance or sensitiv... gi\|15803549, gi\|... - gi\|15803549\|ref\|NP_289582.1\| biopolymer transport protein ExbD [Escherichia coli O157:H7 EDL933], gi... gi\|208821821, gi... - gi\|208821821\|ref\|ZP_03262141.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC... gi\|208735655, gi... - gi\|208814378\|ref\|ZP_03255707.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC... gi\|209913739, gi... - gi\|209920480\|ref\|YP_002294564.1\| biopolymer transport protein ExbD [Escherichia coli SE11], gi\|20991... gi\|209160462, gi... - gi\|209399062\|ref\|YP_002272483.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. E... gi\|13363361, gi\|... - gi\|15833143\|ref\|NP_311916.1\| biopolymer transport protein ExbD [Escherichia coli O157:H7 str. Sakai]... gi\|217326983, gi... - gi\|217326983\|ref\|ZP_03443066.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. TW... gi\|110643243, gi... - gi\|110643243\|ref\|YP_670973.1\| biopolymer transport protein ExbD [Escherichia coli 536], gi\|110344835... gi\|215488330, gi... - gi\|215488330\|ref\|YP_002330761.1\| biopolymer transport protein ExbD [Escherichia coli O127:H6 str. E2... gi\|110806906, gi... - gi\|110806906\|ref\|YP_690426.1\| biopolymer transport protein ExbD [Shigella flexneri 5 str. 8401], gi\|... gi\|218560079, gi... - gi\|218560079\|ref\|YP_002392992.1\| biopolymer transport protein ExbD [Escherichia coli S88], gi\|218366... gi\|218362346, gi... - gi\|218555578\|ref\|YP_002388491.1\| biopolymer transport protein ExbD [Escherichia coli IAI1], gi\|21836... gi\|168785875, gi... - gi\|189374180\|gb\|EDU92596.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC869]... gi\|168781877, gi... - gi\|189000648\|gb\|EDU69634.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4076... gi\|170018739, gi... - gi\|170018739\|ref\|YP_001723693.1\| biopolymer transport protein ExbD [Escherichia coli ATCC 8739], gi\|... gi\|168797593, gi... - gi\|189379767\|gb\|EDU98183.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC508]... gi\|170519477, gi... - gi\|170681759\|ref\|YP_001745270.1\| TonB system transport protein ExbD [Escherichia coli SMS-3-5], gi\|1... gi\|170082550, gi... - gi\|170082550\|ref\|YP_001731870.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|208726442, gi... - gi\|208806641\|ref\|ZP_03248978.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC... gi\|195937150 - gi\|195937150\|ref\|ZP_03082532.1\| biopolymer transport protein ExbD [Escherichia coli O157:H7 str. EC4... gi\|218353446, gi... - gi\|218696714\|ref\|YP_002404381.1\| biopolymer transport protein ExbD [Escherichia coli 55989], gi\|2183... gi\|218691295, gi... - gi\|218691295\|ref\|YP_002399507.1\| biopolymer transport protein ExbD [Escherichia coli ED1a], gi\|21842... EXBD_ECOLI - Biopolymer transport exbD protein - Escherichia coli gi\|218706633, gi... - gi\|218706633\|ref\|YP_002414152.1\| biopolymer transport protein ExbD [Escherichia coli UMN026], gi\|218... gi\|218371764, gi... - gi\|218701778\|ref\|YP_002409407.1\| biopolymer transport protein ExbD [Escherichia coli IAI39], gi\|2183...	4.0E-37	[1..140]	[1..140]
gi\|38327067 - gi\|38327067\|gb\|AAR17606.1\| ExbD [Photorhabdus temperata] gi\|38327067\|gb\|A... - ExbD [Photorhabdus temperata]	1.0E-36	[1..141]	[1..141]
gi\|30138255, gi\|... - gi\|30248369\|ref\|NP_840439.1\| biopolymer transport protein ExbD/TolR [Nitrosomonas europaea ATCC 1971...	1.0E-36	[1..136]	[1..136]
gi\|83592428, gi\|... - gi\|83592428\|ref\|YP_426180.1\| biopolymer transport protein ExbD/TolR [Rhodospirillum rubrum ATCC 1117... gi\|48765099 - ref\|ZP_00269650.1\| COG0848: Biopolymer transport protein [Rhodospirillum rubrum]	2.0E-36	[4..140]	[8..144]
gi\|238716296, gi... - gi\|77959548\|ref\|ZP_00823567.1\| COG0848: Biopolymer transport protein [Yersinia bercovieri ATCC 43970... gi\|238699402, gi... - gi\|238762417\|ref\|ZP_04623388.1\| Biopolymer transport ExbD protein [Yersinia kristensenii ATCC 33638]...	3.0E-36	[1..140]	[1..140]
gi\|77974156, gi\|... - gi\|77974156\|ref\|ZP_00829698.1\| COG0848: Biopolymer transport protein [Yersinia frederiksenii ATCC 33...	5.0E-36	[1..139]	[1..139]
gi\|81242375, gi\|... - gi\|82778227\|ref\|YP_404576.1\| biopolymer transport protein ExbD [Shigella dysenteriae Sd197], gi\|8124...	5.0E-36	[1..140]	[1..140]
gi\|51597680, gi\|... - gi\|51597680\|ref\|YP_071871.1\| biopolymer transport protein ExbD [Yersinia pseudotuberculosis IP 32953... Q665X8\|Q665X8_YERPS - ExbD/TolR-family transport protein - Yersinia pseudotuberculosis	6.0E-36	[3..143]	[1..141]
gi\|145597777, gi... - gi\|145597777\|ref\|YP_001161853.1\| biopolymer transport protein ExbD [Yersinia pestis Pestoides F], gi... gi\|165923183, gi... - gi\|165924983\|ref\|ZP_02220815.1\| tonB system transport protein ExbD [Yersinia pestis biovar Orientali... gi\|108810705, gi... - gi\|108810705\|ref\|YP_646472.1\| biopolymer transport protein ExbD [Yersinia pestis Nepal516], gi\|10877... gi\|108809100, gi... - gi\|108809100\|ref\|YP_653016.1\| biopolymer transport protein ExbD [Yersinia pestis Antiqua], gi\|108781...	8.0E-36	[3..143]	[1..141]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMRMNDSLD ESGELHEINV TPFIDVMLVL LIIFMVAAPL ATVDIKVDLP ASSAVPQPRP  60
   61 EKPVFLTVKA DNQLYVGDQP VDRETLATAL DKVTQSNKET TIFFQADKVV DYETLMSVMD 120
  121 ALRKSGYLKV GLVGMEAGSS GAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.69897
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.921	N/A	N/A	c.46.1	Rhodanese/Cell cycle control phosphatase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits