YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170520146, gi...
Organism:	Escherichia coli SMS-3-5
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170520146, gi....

Description	E-value	Query Range	Subject Range
gi\|60468186 - gi\|60468186\|gb\|EAL66196.1\| hypothetical protein DDB0204910 [Dictyostelium discoideum] gi\|66812030, gi\|... - gi\|66812030\|ref\|XP_640194.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468186\|gb\|EAL...	159.0	[0..4]	[301..213]
gi\|86162035, gi\|... - gi\|87122657\|ref\|ZP_01078533.1\| possible transporter, EamA family protein [Marinomonas sp. MED121], g...	143.0	[0..4]	[317..523]
gi\|37528410, gi\|... - gi\|37528410\|ref\|NP_931755.1\| hypothetical protein plu4591 [Photorhabdus luminescens subsp. laumondii...	141.0	[0..9]	[313..17]
gi\|224585098, gi... - gi\|224585098\|ref\|YP_002638897.1\| hypothetical protein SPC_3371 [Salmonella enterica subsp. enterica ... gi\|213646990 - gi\|213646990\|ref\|ZP_03377043.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|213053036 - gi\|213053036\|ref\|ZP_03345914.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|204931191, gi... - gi\|204931191\|ref\|ZP_03221985.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ja... gi\|194449127, gi... - gi\|194449127\|ref\|YP_002047331.1\| putative transporter [Salmonella enterica subsp. enterica serovar H... gi\|194444511, gi... - gi\|194444511\|ref\|YP_002042560.1\| putative transporter [Salmonella enterica subsp. enterica serovar N... gi\|168819630, gi... - gi\|205343288\|gb\|EDZ30052.1\| putative transporter [Salmonella enterica subsp. enterica serovar Weltev... gi\|168463474, gi... - gi\|195633324\|gb\|EDX51738.1\| putative transporter [Salmonella enterica subsp. enterica serovar Newpor... gi\|62129443, gi\|... - gi\|62181810\|ref\|YP_218227.1\| hypothetical protein SC3240 [Salmonella enterica subsp. enterica serova... gi\|197262643, gi... - gi\|197262643\|ref\|ZP_03162717.1\| putative transporter [Salmonella enterica subsp. enterica serovar Sa... gi\|197211501, gi... - gi\|197247798\|ref\|YP_002148227.1\| putative transporter [Salmonella enterica subsp. enterica serovar A... gi\|194734771, gi... - gi\|194734771\|ref\|YP_002116252.1\| putative transporter [Salmonella enterica subsp. enterica serovar S... gi\|194469744, gi... - gi\|194469744\|ref\|ZP_03075728.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ke... gi\|205323197, gi... - gi\|205323197\|gb\|EDZ11036.1\| putative transporter [Salmonella enterica subsp. enterica serovar Saintp... gi\|161365675, gi... - gi\|161616311\|ref\|YP_001590276.1\| hypothetical protein SPAB_04119 [Salmonella enterica subsp. enteric... gi\|168262687, gi... - gi\|205348613\|gb\|EDZ35244.1\| putative transporter [Salmonella enterica subsp. enterica serovar Hadar ... gi\|205337856, gi... - gi\|205337856\|gb\|EDZ24620.1\| putative transporter [Salmonella enterica subsp. enterica serovar Heidel... gi\|197289158, gi... - gi\|197289158\|gb\|EDY28527.1\| putative transporter [Salmonella enterica subsp. enterica serovar Schwar... gi\|168231912, gi... - gi\|205333817\|gb\|EDZ20581.1\| putative transporter [Salmonella enterica subsp. enterica serovar Kentuc... gi\|238910096 - gi\|238910096\|ref\|ZP_04653933.1\| hypothetical protein SentesTe_03020 [Salmonella enterica subsp. ente... gi\|16762064 - gi\|16762064\|ref\|NP_457681.1\| hypothetical protein STY3481 [Salmonella enterica subsp. enterica serov... gi\|25512542, gi\|... - gi\|25512542\|pir\|\|AE0903 probable membrane protein STY3481 [imported] - Salmonella enterica subsp. en... gi\|29139188, gi\|... - gi\|29143553\|ref\|NP_806895.1\| hypothetical protein t3219 [Salmonella enterica subsp. enterica serovar...	140.0	[0..1]	[321..1]
gi\|28203124, gi\|... - gi\|28210686\|ref\|NP_781630.1\| membrane spanning protein [Clostridium tetani E88], gi\|28203124\|gb\|AAO3...	138.0	[0..7]	[306..6]
gi\|89084144, gi\|... - gi\|89101143\|ref\|ZP_01173977.1\| transporter, EamA family protein [Bacillus sp. NRRL B-14911], gi\|8908...	138.0	[0..5]	[315..27]
gi\|197364161, gi... - gi\|197364161\|ref\|YP_002143798.1\| hypothetical protein SSPA2957 [Salmonella enterica subsp. enterica ... gi\|56129488, gi\|... - gi\|56415231\|ref\|YP_152306.1\| hypothetical protein SPA3169 [Salmonella enterica subsp. enterica serov...	138.0	[0..1]	[321..1]
gi\|110345016, gi... - gi\|110643424\|ref\|YP_671154.1\| transport protein YhbE [Escherichia coli 536], gi\|110345016\|gb\|ABG7125... gi\|215266572, gi... - gi\|215488500\|ref\|YP_002330931.1\| conserved inner membrane protein [Escherichia coli O127:H6 str. E23...	136.0	[0..1]	[321..1]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	136.0	[0..21]	[301..420]
gi\|91212606, gi\|... - gi\|91212606\|ref\|YP_542592.1\| transport protein YhbE [Escherichia coli UTI89], gi\|91074180\|gb\|ABE0906... gi\|26249767, gi\|... - gi\|26249767\|ref\|NP_755807.1\| putative transport protein YhbE [Escherichia coli CFT073], gi\|26110195\|... gi\|218429038, gi... - gi\|218691474\|ref\|YP_002399686.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|226899104, gi... - gi\|237706064\|ref\|ZP_04536545.1\| transporter YhbE [Escherichia sp. 3_2_53FAA], gi\|226899104\|gb\|EEH853... gi\|227887905, gi... - gi\|227887905\|ref\|ZP_04005710.1\| transporter [Escherichia coli 83972], gi\|227835301\|gb\|EEJ45767.1\| tr... gi\|218550467, gi... - gi\|218550467\|ref\|YP_002384258.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|115514602, gi... - gi\|117625478\|ref\|YP_858801.1\| hypothetical protein APECO1_32482 [Escherichia coli APEC O1], gi\|11551... gi\|218367023, gi... - gi\|218560254\|ref\|YP_002393167.1\| conserved hypothetical protein; putative inner membrane protein [Es...	135.0	[0..1]	[321..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQAGIGIL LALTTAICWG ALPIAMKQVL EVMEPPTIVF YRFLMASIGL GAILAVKKRL  60
   61 PPLRVFRKPR WLILLAVATA GLFGNFILFS SSLQYLSPTA SQVIGQLSPV GMMVASVFIL 120
  121 KEKMRSTQVV GALMLLSGLV MFFNTSLVEI FTKLT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.958607
Match:	PF00892.11
Description:	No description for PF00892.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYTWGVIFGV GAATVWVSYG VAQKVLLRRL ASPQILFLLY TLCTIALFPL AKPGVIAQLS  60
   61 HWQLACLIFC GLNTLVGYGA LAEAMARWQA AQVSAIITLT PLFTLFFSDL LSLAWPDFFA 120
  121 RPMLNLLGYL GAFVVVAGAM YSAIGHRIWG GLRKHTTVVS QPRAGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.18
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits