YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170080560, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170080560, gi....

Description	E-value	Query Range	Subject Range
gi\|90412861, gi\|... - gi\|90412861\|ref\|ZP_01220861.1\| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium p...	240.0	[0..1]	[246..1]
gi\|90579339, gi\|... - gi\|90579339\|ref\|ZP_01235149.1\| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum ...	237.0	[0..1]	[246..1]
gi\|46914345, gi\|... - gi\|54309906\|ref\|YP_130926.1\| pyruvate formate lyase-activating enzyme 1 [Photobacterium profundum SS...	237.0	[0..1]	[246..1]
tr\|D7H9T4\|D7H9T4... - Pyruvate formate-lyase 1 activating enzyme OS=Vibrio cholerae RC385 GN=VCRC385_01301 PE=4 SV=1 gi\|150420196, gi... - gi\|75824114\|ref\|ZP_00753580.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae RC...	232.0	[0..1]	[246..1]
gi\|254229008, gi... - gi\|75856412\|ref\|ZP_00764041.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio sp. Ex25], ...	232.0	[0..1]	[246..1]
gi\|153213085, gi... - gi\|153213085\|ref\|ZP_01948623.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587], g... gi\|229347954, gi... - gi\|229515249\|ref\|ZP_04404709.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21], g... gi\|153222986, gi... - gi\|153222986\|ref\|ZP_01953576.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MAK 757]... gi\|229343554, gi... - gi\|229518865\|ref\|ZP_04408308.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9], gi\|2... gi\|153818851, gi... - gi\|153818851\|ref\|ZP_01971518.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC 845... gi\|229342695, gi... - gi\|229520329\|ref\|ZP_04409755.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM 11079-8... gi\|229351692, gi... - gi\|229511727\|ref\|ZP_04401206.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33], gi\|2... gi\|229337469, gi... - gi\|229523888\|ref\|ZP_04413293.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv. albens... gi\|229529108, gi... - gi\|229529108\|ref\|ZP_04418498.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)],... gi\|229370236, gi... - gi\|229607581\|ref\|YP_002878229.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236],... gi\|150423201, gi... - gi\|254286774\|ref\|ZP_04961728.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae AM-19226... gi\|153830545, gi... - gi\|153830545\|ref\|ZP_01983212.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39],... gi\|153825235, gi... - gi\|153825235\|ref\|ZP_01977902.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2], ... gi\|254848956, gi... - gi\|75830397\|ref\|ZP_00759676.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae MO... gi\|146316003, gi... - gi\|75827194\|ref\|ZP_00756629.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae O3... gi\|9656400, gi\|1... - gi\|9656400\|gb\|AAF95017.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1 biovar El T... gi\|116220415, gi... - gi\|75819694\|ref\|ZP_00749763.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae V5... gi\|11256581 - pir\|\|C82145 pyruvate formate-lyase 1 activating enzyme VC1869 [imported] - Vibrio cholerae (strain N... gi\|121630492, gi... - gi\|75815877\|ref\|ZP_00746366.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae V5... gi\|183012918, gi... - gi\|183179507\|ref\|ZP_02957718.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3], ... gi\|227081998, gi... - gi\|227081998\|ref\|YP_002810549.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2],... gi\|121587313, gi... - gi\|121587313\|ref\|ZP_01677085.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 2740-80]... gi\|229508034, gi... - gi\|229508034\|ref\|ZP_04397539.1\| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX 330286]...	231.0	[0..1]	[246..1]
gi\|28805979, gi\|... - gi\|28897766\|ref\|NP_797371.1\| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus RIM... gi\|149749368, gi... - gi\|153837337\|ref\|ZP_01990004.1\| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus ... gi\|28805979 - gi\|28805979\|dbj\|BAC59255.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus RIMD...	231.0	[0..1]	[246..1]
gi\|91225254, gi\|... - gi\|91225254\|ref\|ZP_01260422.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 12G0...	230.0	[0..1]	[246..1]
gi\|86148860, gi\|... - gi\|86148860\|ref\|ZP_01067118.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222], gi\|85...	230.0	[0..1]	[246..1]
gi\|24051168, gi\|... - ref\|NP_706820.1\| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a str. 301], gb\|AAN... gi\|91071577, gi\|... - gi\|91210003\|ref\|YP_539989.1\| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89], gi... gi\|26107327, gi\|... - gi\|26246927\|ref\|NP_752967.1\| Pyruvate formate-lyase 1 activating enzyme [Escherichia coli CFT073], g... gi\|226898320, gi... - gi\|237707110\|ref\|ZP_04537591.1\| pyruvate formate-lyase 1 activating enzyme [Escherichia sp. 3_2_53FA... gi\|227838885, gi... - gi\|227884133\|ref\|ZP_04001938.1\| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972],... gi\|187431193, gi... - gi\|187734201\|ref\|YP_001880903.1\| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC 308...	229.0	[0..1]	[246..10]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIGRIHSF ESCGTVDGPG IRFITFFQGC LMRCLYCHNR DTWDTHGGKE VTVEDLMKEV  60
   61 VTYRHFMNAS GGGVTASGGE AILQAEFVRD WFRACKKEGI HTCLDTNGFV RRYDPVIDEL 120
  121 LEVTDLVMLD LKQMNDEIHQ NLVGVSNHRT LEFAKYLANK NVKVWIRYVV VPGWSDDDDS 180
  181 AHRLGEFTRD MGNVEKIELL PYHELGKHKW VAMGEEYKLD GVKPPKKETM ERVKGILEQY 240
  241 GHKVMF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.154902
Match:	2fb2A
Description:	No description for 2fb2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits