YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166205654, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166205654, gi....

Description	E-value	Query Range	Subject Range
gi\|77961824, gi\|... - gi\|77961824\|ref\|ZP_00825654.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i...	2.0E-41	[1..206]	[1..206]
gi\|45443759, gi\|... - gi\|45443759\|ref\|NP_995298.1\| glucose-inhibited division protein B [Yersinia pestis biovar Microtus s... gi\|22128011, gi\|... - gi\|22128011\|ref\|NP_671434.1\| glucose-inhibited division protein B [Yersinia pestis KIM], gi\|21961159...	3.0E-41	[2..206]	[19..223]
gi\|238787870, gi... - gi\|77973808\|ref\|ZP_00829353.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i...	3.0E-41	[2..206]	[5..209]
gi\|77977928, gi\|... - gi\|77977928\|ref\|ZP_00833365.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i...	3.0E-41	[1..206]	[1..206]
gi\|77958194, gi\|... - gi\|77958194\|ref\|ZP_00822232.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i...	1.0E-40	[1..206]	[1..206]
RSMG_SALPB - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RSMG_SALTY, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium GN=rsmG PE=3 SV=1, Methylt... RSMG_SALCH, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis GN=rsmG PE=3 SV=1, Methyl... RSMG_SALTI, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhi GN=rsmG PE=3 SV=1, Methyltransfe... GIDB_SALPA, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A GN=rsmG PE=3 SV=1, Methylt... RSMG_SALHS - Ribosomal RNA small subunit methyltransferase G OS=Salmonella heidelberg (strain SL476) GN=rsmG PE=3... RSMG_SALNS - Ribosomal RNA small subunit methyltransferase G OS=Salmonella newport (strain SL254) GN=rsmG PE=3 SV... RSMG_SALPK - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A (strain AKU_12601) GN=rsmG... gi\|197240084, gi... - gi\|197261829\|ref\|ZP_03161903.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica... gi\|205327328, gi... - gi\|205327328\|gb\|EDZ14092.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... gi\|168823140, gi... - gi\|205340562\|gb\|EDZ27326.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... gi\|168245183, gi... - gi\|205336052\|gb\|EDZ22816.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... RSMG_SALTI - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhi GN=rsmG PE=3 SV=1 gi\|16762453 - gi\|16762453\|ref\|NP_458070.1\| glucose-inhibited division protein B [Salmonella enterica subsp. enteri... RSMG_SALTY - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|29139577, gi\|... - gi\|29143941\|ref\|NP_807283.1\| glucose-inhibited division protein B [Salmonella enterica subsp. enteri... gi\|213850448 - gi\|213850448\|ref\|ZP_03381346.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... RSMG_SALPB - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RSMG_SALCH - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis GN=rsmG PE=3 SV=1 gi\|199605859, gi... - gi\|200388761\|ref\|ZP_03215373.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica... RSMG_SALTY - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium GN=rsmG PE=3 SV=1 RSMG_SALDC - Ribosomal RNA small subunit methyltransferase G OS=Salmonella dublin (strain CT_02021853) GN=rsmG PE... RSMG_SALCH - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis (strain SC-B67) GN=rsmG P... gi\|213649866 - gi\|213649866\|ref\|ZP_03379919.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... RSMG_SALPA - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... gi\|213052662 - gi\|213052662\|ref\|ZP_03345540.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent...	2.0E-40	[1..206]	[1..205]
RSMG_SODGM - Ribosomal RNA small subunit methyltransferase G OS=Sodalis glossinidius (strain morsitans) GN=rsmG P...	3.0E-40	[1..206]	[1..206]
RSMG_ECO55 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain 55989 / EAEC) GN=rsmG PE... RSMG_ECO81 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O81 (strain ED1a) GN=rsmG PE=3 S... gi\|227883962, gi... - gi\|227883962\|ref\|ZP_04001767.1\| glucose-inhibited division protein B [Escherichia coli 83972], gi\|22... gi\|237703541, gi... - gi\|237703541\|ref\|ZP_04534022.1\| ribosomal RNA small subunit methyltransferase G [Escherichia sp. 3_2... RSMG_ECOBW - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... gi\|242379278, gi... - gi\|251787005\|ref\|YP_003001309.1\| hypothetical protein B21_03568 [Escherichia coli BL21], gi\|24237927... gi\|254290442, gi... - gi\|254290442\|ref\|YP_003056190.1\| glucose-inhibited division protein [Escherichia coli BL21(DE3)], gi... gi\|226838924, gi... - gi\|254038959\|ref\|ZP_04873011.1\| methyltransferase gidB [Escherichia sp. 1_1_43], gi\|226838924\|gb\|EEH... gi\|254795746, gi... - gi\|254795746\|ref\|YP_003080583.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibit... RSMG_ECOLC - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|168748530, gi... - gi\|188016845\|gb\|EDU54967.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4113], ... gi\|208738796, gi... - gi\|208818673\|ref\|ZP_03258993.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC404... gi\|208812418, gi... - gi\|208812418\|ref\|ZP_03253747.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC404... RSMG_ECOSE - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain SE11) GN=rsmG PE=3 SV=1 RSMG_ECO5E - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|217324250, gi... - gi\|217324250\|ref\|ZP_03440334.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. TW145... RSMG_ECO27 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... RSMG_ECO45 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=r... RSMG_ECO8A - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O8 (strain IAI1) GN=rsmG PE=3 SV... gi\|189364706, gi... - gi\|189364706\|gb\|EDU83125.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4486], ... gi\|168753642, gi... - gi\|189358956\|gb\|EDU77375.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4401], ... gi\|189002346, gi... - gi\|189002346\|gb\|EDU71332.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4076], ... gi\|168772211, gi... - gi\|187771511\|gb\|EDU35355.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4196], ... RSMG_ECODH - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain K12 / DH10B) GN=rsmG PE=... gi\|189373248, gi... - gi\|189373248\|gb\|EDU91664.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC869], g... RSMG_ECOL6, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O6 GN=rsmG PE=3 SV=1, Methyltran... gi\|208728641, gi... - gi\|208808840\|ref\|ZP_03251177.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC420... GIDB_ECOLI - Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited division protein B) - Escherichia coli gi\|195936367 - gi\|195936367\|ref\|ZP_03081749.1\| glucose-inhibited division protein B [Escherichia coli O157:H7 str. ... RSMG_ECOL6 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... gi\|30043216, gi\|... - gi\|30064955\|ref\|NP_839126.1\| glucose-inhibited division protein B [Shigella flexneri 2a str. 2457T],... RSMG_ECO57 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O157:H7 GN=rsmG PE=3 SV=1 EG10376 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein / 16S rR... gi\|12518597, gi\|... - gi\|15804340\|ref\|NP_290379.1\| glucose-inhibited division protein B [Escherichia coli O157:H7 EDL933],... RSMG_SHIBS - Ribosomal RNA small subunit methyltransferase G OS=Shigella boydii serotype 4 (strain Sb227) GN=rsmG... RSMG_ECOUT - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain UTI89 / UPEC) GN=rsmG PE... gi\|85676298, gi\|... - gi\|89110267\|ref\|AP_004047.1\| methyltransferase, glucose-inhibited cell-division protein [Escherichia... gi\|15833936, gi\|... - gi\|15833936\|ref\|NP_312709.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. Sakai], ... gi\|75514194, gi\|... - gi\|75514194\|ref\|ZP_00736502.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMG_ECOL5 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... RSMG_SHISS - Ribosomal RNA small subunit methyltransferase G OS=Shigella sonnei (strain Ss046) GN=rsmG PE=3 SV=1 RSMG_SHIF8 - Ribosomal RNA small subunit methyltransferase G OS=Shigella flexneri serotype 5b (strain 8401) GN=rs... RSMG_ECOHS - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O9:H4 (strain HS) GN=rsmG PE=3 S... gi\|194413862, gi... - gi\|75210650\|ref\|ZP_00710791.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|194425155, gi... - gi\|83588395\|ref\|ZP_00927019.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMG_SHIB3 - Ribosomal RNA small subunit methyltransferase G OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... gi\|191170432, gi... - gi\|75242472\|ref\|ZP_00726216.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|192930543, gi... - gi\|75258279\|ref\|ZP_00729727.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... sp\|B7UMK5\|RSMG_ECO27 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... gi\|192955070, gi... - gi\|75214823\|ref\|ZP_00713308.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|75226621, gi\|... - gi\|75226621\|ref\|ZP_00713630.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... EG10376 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein / 16S rR... RSMG_ECOK1 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O1:K1 / APEC GN=rsmG PE=3 SV=1 gi\|124530046, gi... - gi\|124530046\|ref\|ZP_01700829.1\| methyltransferase GidB [Escherichia coli B], gi\|124499451\|gb\|EAY4693...	1.0E-39	[1..206]	[1..205]
RSMG_SHIDS - Ribosomal RNA small subunit methyltransferase G OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	1.0E-39	[1..206]	[1..205]
gi\|224470196, gi... - gi\|224585668\|ref\|YP_002639467.1\| glucose-inhibited division protein B [Salmonella enterica subsp. en... gi\|213579758 - gi\|213579758\|ref\|ZP_03361584.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=gidB] [protein=glucose-inhibited division protein B] [protein_id=YP_005240142.1] [location=com... gi\|213026622 - gi\|213026622\|ref\|ZP_03341069.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... gi\|39546379 - gi\|39546379\|ref\|NP_462772.2\| glucose-inhibited division protein B [Salmonella typhimurium LT2] gi\|206710899, gi... - gi\|207859096\|ref\|YP_002245747.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enteric...	1.0E-39	[2..206]	[4..207]

Back

Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKLDSLLT VAGITLPDQQ KHQLIGYVEL LDKWNKAYNL TSVRDPQQML VRHILDSIVV  60
   61 NPHLQGSRFI DVGTGPGLPG IPLAIVRPDA HFTLLDSLGK RVRFLRQVQH ELGLNNIEPV 120
  121 QSRVEAFTSE PPFDGVISRA FASLQDMLSW CHHLPAKPEG RFYALKGVRP DDELAVLPED 180
  181 IVLESVIKLD VPELDGERHL IILKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	1jsxA
Description:	Glucose-inhibited division protein B (GidB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: