YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218894014, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218894014, gi....

Description	E-value	Query Range	Subject Range
gi\|84317541 - gi\|84317541\|ref\|ZP_00965981.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi...	0.0	[1..399]	[3..401]
gi\|84323740 - gi\|84323740\|ref\|ZP_00971808.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi...	0.0	[1..399]	[3..401]
gi\|94417530, gi\|... - gi\|94417530\|ref\|ZP_01297348.1\| hypothetical protein PaerP_01000847 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..398]	[1..398]
PNCB_PSE14 - Nicotinate phosphoribosyltransferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race...	0.0	[1..398]	[1..398]
PNCB_PSEPF - Nicotinate phosphoribosyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pncB PE=3 SV=1	0.0	[1..399]	[1..399]
PNCB_PSEU2 - Nicotinate phosphoribosyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pncB PE=...	0.0	[1..398]	[1..398]
PNCB_PSESM - Nicotinate phosphoribosyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pncB PE=3... PNCB_PSESM - Nicotinate phosphoribosyltransferase OS=Pseudomonas syringae pv. tomato GN=pncB PE=3 SV=1	0.0	[1..398]	[1..398]
gi\|95110182 - gi\|95110182\|emb\|CAK14889.1\| nicotinate phosphoribosyltransferase [Pseudomonas entomophila L48] gi\|95110182, gi\|... - gi\|95110182\|emb\|CAK14889.1\| nicotinate phosphoribosyltransferase [Pseudomonas entomophila L48], gi\|1...	0.0	[1..397]	[1..398]
gi\|68348395, gi\|... - gi\|70734096\|ref\|YP_257736.1\| nicotinate phosphoribosyltransferase [Pseudomonas fluorescens Pf-5], gi...	0.0	[1..399]	[1..399]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESVFAERI VQNLLDTDFY KLTMMQAVLH NYPNAEVEWE FRCRNAEDLR PYLAEIRYQI  60
   61 ERLAEVEVTA DQLAFLERIP FMKPDFIRFL SLFRFNLRYV HTGIEDGQLA IRLRGPWLHV 120
  121 ILFEVPLLAI VSEVRNRYRY REVVLEQVGE QLYRKLDWLS AQASSEELAE FQVADFGTRR 180
  181 RFSYRTQEEV VHILKRDFPG RFVGTSNVHL AREYDLKPIG TMAHEWLMAH QQLGPRLVDS 240
  241 QQAALDCWVR EYRGQLGIAL TDCITMDAFL DDFDLYFAKL FDGLRHDSGD PLAWAEKAIA 300
  301 HYRRLGIDPL SKTLVFSDGL DMPKALQLFR ALRGKINVSF GIGTNLTCDI PGVEPMNIVL 360
  361 KMTACNGHPV AKISDAPGKT QCRDENFVAY LRHVFNVPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	125.0
Match:	1yirA
Description:	Crystal Structure of a Nicotinate Phosphoribosyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate phosphoribosyltransferase activity	5.75487746784842	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	4.79136593406808	bayes_pls_golite062009
nicotinate-nucleotide diphosphorylase (carboxylating) activity	3.97201856258863	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.41342374351311	bayes_pls_golite062009
catalytic activity	2.59603106157451	bayes_pls_golite062009
transferase activity	1.91642626258277	bayes_pls_golite062009
binding	1.73051405037757	bayes_pls_golite062009
protein binding	0.294646489785198	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: