YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208811070, gi...
Organism:	Escherichia coli O157:H7 str. EC4206
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208811070, gi....

Description	E-value	Query Range	Subject Range
gi\|119767435, gi... - gi\|68548184\|ref\|ZP_00587699.1\| UspA [Shewanella amazonensis SB2B], gi\|68514129\|gb\|EAN37875.1\| UspA [...	217.0	[0..1]	[309..1]
gi\|127512922, gi... - gi\|78367942\|ref\|ZP_00838199.1\| UspA [Shewanella sp. PV-4], gi\|78360023\|gb\|EAP01868.1\| UspA [Shewanel...	216.0	[0..1]	[309..1]
SO2355 - universal stress protein family gi\|24373902, gi\|... - gi\|24373902\|ref\|NP_717945.1\| universal stress protein UspE [Shewanella oneidensis MR-1], gi\|24348324...	216.0	[0..1]	[311..1]
gi\|102621431 - gi\|102621431\|gb\|ABF71061.1\| universal stress protein [Enterobacter cloacae]	215.0	[0..1]	[316..1]
gi\|77963331, gi\|... - gi\|77963331\|ref\|ZP_00827142.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	215.0	[0..1]	[316..1]
gi\|90407442, gi\|... - gi\|90407442\|ref\|ZP_01215626.1\| universal stress protein family protein [Psychromonas sp. CNPT3], gi\|...	215.0	[0..1]	[311..1]
gi\|90578592, gi\|... - gi\|90578592\|ref\|ZP_01234402.1\| Putative universal stress protein family [Vibrio angustum S14], gi\|90...	214.0	[0..1]	[308..1]
gi\|77956624, gi\|... - gi\|77956624\|ref\|ZP_00820710.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	213.0	[0..1]	[316..1]
gi\|125999789, gi... - gi\|68543434\|ref\|ZP_00583139.1\| UspA [Shewanella baltica OS155], gi\|68518849\|gb\|EAN42403.1\| UspA [She... gi\|217498529, gi... - gi\|217973394\|ref\|YP_002358145.1\| universal stress protein UspE [Shewanella baltica OS223], gi\|217498... gi\|160860846, gi... - gi\|160875324\|ref\|YP_001554640.1\| universal stress protein UspE [Shewanella baltica OS195], gi\|160860...	212.0	[0..1]	[311..1]
gi\|113885036, gi... - gi\|82498353\|ref\|ZP_00883855.1\| universal stress protein family [Shewanella sp. MR-4], gi\|82403655\|gb... gi\|117612892, gi... - gi\|78687463\|ref\|ZP_00852211.1\| universal stress protein family [Shewanella sp. ANA-3], gi\|78504815\|g... gi\|113888898, gi... - gi\|78691990\|ref\|ZP_00856571.1\| universal stress protein family [Shewanella sp. MR-7], gi\|78508609\|gb...	211.0	[0..1]	[311..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMYQNMLVV IDPNQDDQPA LRRAVYLHQR IGGKIKAFLP IYDFSYEMTT LLSPDERTAM  60
   61 RQGVISQRTA WIHEQAKYYL NAGVPIEIKV VWHNRPFEAI IQEVISGGHD LVLKMAHQHD 120
  121 RLEAVIFTPT DWHLLRKCPS PVWMVKDQPW PEGGKALVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.151149560052223	bayes_pls_golite062009
catalytic activity	0.062439821475123	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [160-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNLASEEPYH NALNEKLVKE TIELAEQVNH TEVHLVGAYP VTPINIAIEL PEFDPSVYND  60
   61 AIRGQHLLAM KALRQKFGIN ENMTHVEKGL PEEVIPDLAE HLQAGIVVLG TVGRTGISAA 120
  121 FLGNTAEQVI DHLRCDLLVI KPDQYQTPVE LDDEEDD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.11
Match:	2gm3A
Description:	No description for 2gm3A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.217387148286278	bayes_pls_golite062009
catalytic activity	0.0212563363932834	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: