YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165990046, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165990046, gi....

Description	E-value	Query Range	Subject Range
APT_YERP3 - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=... APT_YERPY - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apt ... APT_YERPB - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apt P...	9.0E-42	[1..187]	[1..187]
APT_YERPS - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis GN=apt PE=3 SV=1 APT_YERPS - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=apt ...	1.0E-41	[1..187]	[1..187]
APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae GN=apt PE=3 SV=1 APT_HAEIG - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain PittGG) GN=apt PE=3 SV=1 gi\|42631865 - gi\|42631865\|ref\|ZP_00157403.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|145271773, gi... - gi\|145639211\|ref\|ZP_01794818.1\| adenine phosphoribosyltransferase [Haemophilus influenzae PittII], g... APT_HAEI8 - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=apt PE=3 SV=1 gi\|144978790, gi... - gi\|145629287\|ref\|ZP_01785086.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 22.1-21], ... APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ... gi\|229810356, gi... - gi\|229846867\|ref\|ZP_04466974.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 7P49H1], g...	2.0E-41	[12..187]	[5..180]
gi\|153224177, gi... - gi\|153224177\|ref\|ZP_01954267.1\| adenine phosphoribosyltransferase [Vibrio cholerae MAK 757], gi\|1241... gi\|124123534, gi... - gi\|153800943\|ref\|ZP_01955529.1\| adenine phosphoribosyltransferase [Vibrio cholerae MZO-3], gi\|124123... gi\|153819383, gi... - gi\|153819383\|ref\|ZP_01972050.1\| adenine phosphoribosyltransferase [Vibrio cholerae NCTC 8457], gi\|12... APT_VIBCM - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=apt PE=3 SV=1 gi\|229350943, gi... - gi\|229510978\|ref\|ZP_04400457.1\| adenine phosphoribosyltransferase [Vibrio cholerae B33], gi\|22935094... gi\|150422319, gi... - gi\|254291726\|ref\|ZP_04962512.1\| adenine phosphoribosyltransferase [Vibrio cholerae AM-19226], gi\|197... gi\|229505352, gi... - gi\|229505352\|ref\|ZP_04394862.1\| adenine phosphoribosyltransferase [Vibrio cholerae BX 330286], gi\|22... gi\|153828111, gi... - gi\|153828111\|ref\|ZP_01980778.1\| adenine phosphoribosyltransferase [Vibrio cholerae 623-39], gi\|14887... gi\|229515435, gi... - gi\|229515435\|ref\|ZP_04404894.1\| adenine phosphoribosyltransferase [Vibrio cholerae TMA 21], gi\|22934... gi\|153824955, gi... - gi\|153824955\|ref\|ZP_01977622.1\| adenine phosphoribosyltransferase [Vibrio cholerae MZO-2], gi\|149741... gi\|229518099, gi... - gi\|229518099\|ref\|ZP_04407543.1\| adenine phosphoribosyltransferase [Vibrio cholerae RC9], gi\|22934481... gi\|229339523, gi... - gi\|229523160\|ref\|ZP_04412567.1\| adenine phosphoribosyltransferase [Vibrio cholerae TM 11079-80], gi\|... gi\|229339243, gi... - gi\|229525662\|ref\|ZP_04415067.1\| adenine phosphoribosyltransferase [Vibrio cholerae bv. albensis VL42... gi\|229333630, gi... - gi\|229529856\|ref\|ZP_04419246.1\| adenine phosphoribosyltransferase [Vibrio cholerae 12129(1)], gi\|229... gi\|229608371, gi... - gi\|229608371\|ref\|YP_002879019.1\| adenine phosphoribosyltransferase [Vibrio cholerae MJ-1236], gi\|229... APT_VIBCH - Adenine phosphoribosyltransferase OS=Vibrio cholerae GN=apt PE=3 SV=1 APT_VIBC3 - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogaw... gi\|75822023, gi\|... - gi\|75822023\|ref\|ZP_00751739.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|254226378, gi... - gi\|75818312\|ref\|ZP_00748493.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... APT_VIBCH - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N... gi\|116188739, gi... - gi\|75829889\|ref\|ZP_00759179.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|153217530, gi... - gi\|153217530\|ref\|ZP_01951211.1\| adenine phosphoribosyltransferase [Vibrio cholerae 1587], gi\|1241135...	2.0E-41	[7..187]	[1..181]
gi\|42629427 - gi\|42629427\|ref\|ZP_00154974.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	3.0E-41	[12..187]	[5..180]
gi\|121728162, gi... - gi\|75816264\|ref\|ZP_00746739.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	6.0E-41	[7..187]	[1..181]
gi\|15157388, gi\|... - gi\|15889512\|ref\|NP_355193.1\| adenine phosphoribosyltransferase [Agrobacterium tumefaciens str. C58],... gi\|25286869 - gi\|25286869\|pir\|\|A97628 adenine phosphoribosyltransferase (AF109172) [imported] - Agrobacterium tume...	6.0E-41	[15..187]	[26..198]
gi\|73540069, gi\|... - gi\|73540069\|ref\|YP_294589.1\| adenine phosphoribosyltransferase [Ralstonia eutropha JMP134], gi\|72117...	2.0E-40	[15..187]	[33..205]
APT_MANSM - Adenine phosphoribosyltransferase - Mannheimia succiniciproducens (strain MBEL55E)	2.0E-40	[12..187]	[13..188]
APT_CUPMC - Adenine phosphoribosyltransferase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC ...	2.0E-40	[15..187]	[18..190]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSASKTAQ QLKYIKDSIK TIPDYPKAGI LFRDVTSLLE NPKAYSASIK LLSEHYSESG  60
   61 VTKVVGTEAR GFLFGAPVAL ALGVGFVPVR KPGKLPRETI SESYELEYGT DTLEIHTDSI 120
  121 QPGDKVLVVD DLLATGGTIE ATVKLIRRLG GEVVHAAFII NLPELGGEAR LTQQGIHCYS 180
  181 LVSFDGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	2dy0A
Description:	No description for 2dy0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits