YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166958982, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166958982, gi....

Description	E-value	Query Range	Subject Range
gi\|77963331, gi\|... - gi\|77963331\|ref\|ZP_00827142.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	2.0E-57	[1..318]	[1..318]
gi\|108811924, gi... - gi\|229902225\|ref\|ZP_04517346.1\| stress-induced protein [Yersinia pestis Nepal516], gi\|229681121\|gb\|E...	4.0E-57	[1..318]	[1..318]
gi\|77956624, gi\|... - gi\|77956624\|ref\|ZP_00820710.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	1.0E-56	[1..318]	[1..318]
gi\|238792224, gi... - gi\|77979496\|ref\|ZP_00834914.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	3.0E-55	[1..316]	[1..316]
gi\|45441881, gi\|... - gi\|45441881\|ref\|NP_993420.1\| universal stress protein UspE [Yersinia pestis biovar Microtus str. 910...	2.0E-54	[7..318]	[1..312]
gi\|238790358, gi... - gi\|77975379\|ref\|ZP_00830915.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	4.0E-54	[1..308]	[1..308]
USPE_PHOLL - Universal stress protein E OS=Photorhabdus luminescens subsp. laumondii GN=uspE PE=3 SV=1 USPE_PHOLL - Universal stress protein E OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1055...	2.0E-53	[1..313]	[1..314]
gi\|90578592, gi\|... - gi\|90578592\|ref\|ZP_01234402.1\| Putative universal stress protein family [Vibrio angustum S14], gi\|90...	6.0E-53	[1..313]	[1..313]
EG11246 - stress-induced protein / Stress-induced protein; UV-resistance; tandem Usp domains gi\|189361554, gi... - gi\|189361554\|gb\|EDU79973.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|189367040, gi... - gi\|189367040\|gb\|EDU85456.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|168782864, gi... - gi\|188999727\|gb\|EDU68713.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|187769293, gi... - gi\|187769293\|gb\|EDU33137.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|189377958, gi... - gi\|189377958\|gb\|EDU96374.1\| universal stress protein E [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|168788339, gi... - gi\|189371845\|gb\|EDU90261.1\| universal stress protein E [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|169888847, gi... - gi\|170081012\|ref\|YP_001730332.1\| stress-induced protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170020301, gi... - gi\|170020301\|ref\|YP_001725255.1\| universal stress protein UspE [Escherichia coli ATCC 8739], gi\|1697... gi\|168756016, gi... - gi\|189356836\|gb\|EDU75255.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168749025, gi... - gi\|188016601\|gb\|EDU54723.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|117623586, gi... - gi\|117623586\|ref\|YP_852499.1\| universal stress protein UspE [Escherichia coli APEC O1], gi\|115512710... gi\|124527913, gi... - gi\|124527913\|ref\|ZP_01699302.1\| UspA domain protein [Escherichia coli B], gi\|124501077\|gb\|EAY48544.1... USPE_ECOLI - Universal stress protein E - Escherichia coli USPE_SHIFL - Universal stress protein E OS=Shigella flexneri GN=uspE PE=3 SV=2 gi\|30062857, gi\|... - gi\|30062857\|ref\|NP_837028.1\| universal stress protein UspE [Shigella flexneri 2a str. 2457T], gi\|300... USPE_ECOL6 - Universal stress protein E OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=uspE PE... EG11246 - stress-induced protein / Stress-induced protein; UV-resistance; tandem Usp domains USPE_ECO57 - Universal stress protein E OS=Escherichia coli O157:H7 GN=uspE PE=3 SV=2 gi\|15801835, gi\|... - gi\|15801835\|ref\|NP_287853.1\| universal stress protein UspE [Escherichia coli O157:H7 EDL933], gi\|125... gi\|217317612, gi... - gi\|217329173\|ref\|ZP_03445253.1\| universal stress protein E [Escherichia coli O157:H7 str. TW14588], ... gi\|215486630, gi... - gi\|215486630\|ref\|YP_002329061.1\| universal stress protein UspE [Escherichia coli O127:H6 str. E2348/... gi\|218365089, gi... - gi\|218558320\|ref\|YP_002391233.1\| universal stress protein UspE [Escherichia coli S88], gi\|218365089\|... gi\|218360659, gi... - gi\|218553891\|ref\|YP_002386804.1\| universal stress protein UspE [Escherichia coli IAI1], gi\|218360659... gi\|218700053, gi... - gi\|218700053\|ref\|YP_002407682.1\| universal stress protein UspE [Escherichia coli IAI39], gi\|21837003... gi\|218689322, gi... - gi\|218689322\|ref\|YP_002397534.1\| universal stress protein UspE [Escherichia coli ED1a], gi\|218426886... gi\|91210627, gi\|... - gi\|91210627\|ref\|YP_540613.1\| universal stress protein UspE [Escherichia coli UTI89], gi\|91072201\|gb\|... gi\|192931805, gi... - gi\|193062683\|ref\|ZP_03043777.1\| universal stress protein E [Escherichia coli E22], gi\|192931805\|gb\|E... gi\|227886230, gi... - gi\|227886230\|ref\|ZP_04004035.1\| universal stress protein UspE [Escherichia coli 83972], gi\|227836434... gi\|13361379, gi\|... - gi\|15831168\|ref\|NP_309941.1\| universal stress protein UspE [Escherichia coli O157:H7 str. Sakai], gi... gi\|170681219, gi... - gi\|170681219\|ref\|YP_001743843.1\| universal stress protein E [Escherichia coli SMS-3-5], gi\|170518937... gi\|237705363, gi... - gi\|237705363\|ref\|ZP_04535844.1\| universal stress protein UspE [Escherichia sp. 3_2_53FAA], gi\|226900... gi\|110641567, gi... - gi\|110641567\|ref\|YP_669297.1\| universal stress protein UspE [Escherichia coli 536], gi\|110343159\|gb\|... gi\|208811070, gi... - gi\|208811070\|ref\|ZP_03252903.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4206], g... gi\|238900568, gi... - gi\|238900568\|ref\|YP_002926364.1\| stress-induced protein [Escherichia coli BW2952], gi\|238863582\|gb\|A... gi\|110805771, gi... - gi\|110805771\|ref\|YP_689291.1\| universal stress protein UspE [Shigella flexneri 5 str. 8401], gi\|1106... gi\|195938001 - gi\|195938001\|ref\|ZP_03083383.1\| universal stress protein UspE [Escherichia coli O157:H7 str. EC4024] gi\|242377110, gi... - gi\|251784837\|ref\|YP_002999141.1\| hypothetical protein B21_01320 [Escherichia coli BL21], gi\|24237711... gi\|208819869, gi... - gi\|208819869\|ref\|ZP_03260189.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4042], g... gi\|253324709, gi... - gi\|254288220\|ref\|YP_003053968.1\| stress-induced protein [Escherichia coli BL21(DE3)], gi\|253977527\|g... gi\|208816129, gi... - gi\|208816129\|ref\|ZP_03257308.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4045], g... gi\|253973313, gi... - gi\|254161412\|ref\|YP_003044520.1\| stress-induced protein [Escherichia coli B str. REL606], gi\|2539733... gi\|209918578, gi... - gi\|209918578\|ref\|YP_002292662.1\| universal stress protein UspE [Escherichia coli SE11], gi\|209911837... gi\|254592326, gi... - gi\|254792926\|ref\|YP_003077763.1\| stress-induced protein [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|1742190, gi\|8... - gi\|89108181\|ref\|AP_001961.1\| stress-induced protein [Escherichia coli str. K-12 substr. W3110], gi\|1... gi\|209398539, gi... - gi\|209398539\|ref\|YP_002270393.1\| universal stress protein E [Escherichia coli O157:H7 str. EC4115], ... USPE_ECOL6 - Universal stress protein E OS=Escherichia coli O6 GN=uspE PE=3 SV=2 gi\|56479972, gi\|... - gi\|56479972\|ref\|NP_707692.2\| universal stress protein UspE [Shigella flexneri 2a str. 301], gi\|56383... gi\|188492372, gi... - gi\|75515046\|ref\|ZP_00737250.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|73855773, gi\|... - gi\|74312296\|ref\|YP_310715.1\| universal stress protein UspE [Shigella sonnei Ss046], gi\|73855773\|gb\|A... gi\|83569440, gi\|... - gi\|83569440\|ref\|ZP_00920893.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|194424073, gi... - gi\|83587474\|ref\|ZP_00926102.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|192959561, gi... - gi\|75240019\|ref\|ZP_00723980.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|75242133, gi\|... - gi\|75242133\|ref\|ZP_00725927.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|157160844, gi... - gi\|75195481\|ref\|ZP_00705551.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|191165014, gi... - gi\|75231868\|ref\|ZP_00718209.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	2.0E-52	[1..316]	[1..316]
gi\|102621431 - gi\|102621431\|gb\|ABF71061.1\| universal stress protein [Enterobacter cloacae]	2.0E-52	[1..316]	[1..316]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKYQNILVA IDPNQDDQPA LRRAVYLVQR NGGTIKAFLA IYDLSYDMTT LLSPDERTAM  60
   61 RKGVISQRSA WISEQCRFYI DSGIPIDIKV VWHNRPYEAI IQEVLKAKHD LLLKMAHQHD 120
  121 RLESIIFTPT DWHLLRKCPC PVWMVKDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [149-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWPEEGTALV AVNLSSEDPL HDPLNLRLVK ETLELAEHVN QTPVHLISAY PVTPINIAIE  60
   61 LPDFDPSVYN DAIRGQHLVA MKALRQQFGI DEKFTHVEKG LPEEVIPDLA EHLNAGVVVL 120
  121 GTLGRTGLSA AFIGNTTEHV IDNLKCDLLA IKPEGFTCPI EGNEDQEDAE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.16
Match:	1wjgA
Description:	Crystal structure of a probable ATP binding protein from thermus themophilus HB8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits