YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194337947
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194337947.

Description	E-value	Query Range	Subject Range
gi\|21239245 - gi\|21239245\|gb\|AAM44223.1\|AF461013_2 MerT [Klebsiella pneumoniae] gi\|2117131 - gi\|2117131\|emb\|CAA70239.1\| mercuric ion transport protein [Escherichia coli]	167.0	[0..2]	[116..22]
gi\|117615103, gi... - gi\|78684820\|ref\|ZP_00849602.1\| putative mercuric transport protein [Shewanella sp. ANA-3], gi\|785073... gi\|2117120 - gi\|2117120\|emb\|CAA70228.1\| mercuric ion transport protein [Enterobacter cloacae]	163.0	[0..2]	[116..17]
gi\|133756187, gi... - gi\|221218605\|ref\|YP_002527563.1\| mercury resistance operon mercuric transport protein MerT [Escheric... gi\|89103288 - gi\|89103288\|ref\|ZP_01175872.1\| hypothetical protein Ypesb_01002686 [Yersinia pestis biovar Orientali... gi\|142856073, gi... - gi\|145301296\|ref\|YP_001144136.1\| putative mercuric transport protein [Aeromonas salmonicida subsp. s...	162.0	[0..1]	[116..19]
MERT_ENTAG - Mercuric transport protein OS=Enterobacter agglomerans GN=merT PE=3 SV=1	159.0	[0..2]	[116..12]
gi\|31746423, gi\|... - gi\|31795179\|ref\|NP_858037.1\| putative mercuric transport protein [uncultured bacterium], gi\|31746423...	157.0	[0..1]	[116..19]
gi\|2947087 - gi\|2947087\|gb\|AAC38231.1\| mercury transport protein [Pseudomonas stutzeri]	154.0	[0..1]	[116..1]
gi\|226425894, gi... - gi\|226809979\|ref\|YP_002791673.1\| MerT [Enterobacter cloacae], gi\|226807669\|ref\|YP_002791363.1\| MerT ... gi\|90265381, gi\|... - gi\|90265381\|emb\|CAJ77063.1\| Mercuric ion transport protein [Acinetobacter baumannii], gi\|225121185\|g... gi\|190710534 - gi\|190710534\|gb\|ACE95097.1\| MerT, mercuric ion transport protein [Pseudomonas aeruginosa] gi\|38259422, gi\|... - gi\|38347945\|ref\|NP_941194.1\| putative mercuric transport protein [Serratia marcescens], gi\|38259422\|... gi\|16505869, gi\|... - gi\|18466553\|ref\|NP_569361.1\| putative mercuric transport protein [Salmonella enterica subsp. enteric...	154.0	[0..2]	[116..7]
gi\|30248846, gi\|... - gi\|30248846\|ref\|NP_840916.1\| putative mercuric transport protein [Nitrosomonas europaea ATCC 19718],...	153.0	[0..1]	[116..1]
MERT_ALCSP - Mercuric transport protein OS=Alcaligenes sp. GN=merT PE=3 SV=1 gi\|118002065, gi... - gi\|221067087\|ref\|ZP_03543192.1\| Mercuric transport protein MerT [Comamonas testosteroni KF-1], gi\|22... gi\|71485981, gi\|... - gi\|71548800\|ref\|ZP_00669024.1\| Mercuric transport protein MerT [Nitrosomonas eutropha C71], gi\|71485...	152.0	[0..1]	[116..1]
gi\|15920009, gi\|... - gi\|15920009\|ref\|NP_361069.1\| putative mercuric transport protein [Plasmid pSB102], gi\|15722308\|emb\|C...	152.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPQNGRGA LFAGGLAAIL ASTCCLGPLV LVALGFSGAW IGNLTVLEPY RPLFIGAALV  60
   61 ALFFAWKRIY RPVQACKPGE VCAIPQVRAT YKLIFWIVAV LVLVALGFPY VVPFFY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.207608
Match:	PF02411.6
Description:	No description for PF02411.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits