YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161511358
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161511358.

Description	E-value	Query Range	Subject Range
YFBU_SALCH - UPF0304 protein yfbU OS=Salmonella choleraesuis GN=yfbU PE=3 SV=1 YFBU_SALCH - UPF0304 protein YfbU OS=Salmonella choleraesuis (strain SC-B67) GN=yfbU PE=3 SV=1 YFBU_SALCH - UPF0304 protein yfbU OS=Salmonella choleraesuis GN=yfbU PE=3 SV=1	5.0E-71	[1..164]	[1..164]
lcl\|NC_016856.1_... - [gene=yfbU] [protein=hypothetical protein] [protein_id=YP_005238413.1] [location=complement(2498119.... YFBU_SALTY - UPF0304 protein yfbU OS=Salmonella typhimurium GN=yfbU PE=3 SV=1 YFBU_SALTI - UPF0304 protein yfbU OS=Salmonella typhi GN=yfbU PE=3 SV=1 YFBU_SALPA - UPF0304 protein yfbU OS=Salmonella paratyphi A GN=yfbU PE=3 SV=1 gi\|213619218 - gi\|213619218\|ref\|ZP_03373044.1\| hypothetical protein SentesTyp_23235 [Salmonella enterica subsp. ent... gi\|213052860 - gi\|213052860\|ref\|ZP_03345738.1\| hypothetical protein Salmoneentericaenterica_08053 [Salmonella enter... YFBU_SALTY - UPF0304 protein YfbU OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfbU PE=3 SV... gi\|168229707, gi... - gi\|205335863\|gb\|EDZ22627.1\| YfbU domain protein [Salmonella enterica subsp. enterica serovar Kentuck... gi\|29136670, gi\|... - gi\|29141044\|ref\|NP_804386.1\| hypothetical protein t0529 [Salmonella enterica subsp. enterica serovar... YFBU_SALTI - UPF0304 protein YfbU OS=Salmonella typhi GN=yfbU PE=3 SV=1 YFBU_SALEP - UPF0304 protein YfbU OS=Salmonella enteritidis PT4 (strain P125109) GN=yfbU PE=3 SV=1 YFBU_SALTY - UPF0304 protein yfbU OS=Salmonella typhimurium GN=yfbU PE=3 SV=1 YFBU_SALPA - UPF0304 protein YfbU OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfbU PE=3 SV=1 YFBU_SALG2 - UPF0304 protein YfbU OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfbU PE=3 SV=1 gi\|16761260 - gi\|16761260\|ref\|NP_456877.1\| hypothetical protein STY2565 [Salmonella enterica subsp. enterica serov... YFBU_SALPK - UPF0304 protein YfbU OS=Salmonella paratyphi A (strain AKU_12601) GN=yfbU PE=3 SV=1 gi\|238912387 - gi\|238912387\|ref\|ZP_04656224.1\| hypothetical protein SentesTe_14816 [Salmonella enterica subsp. ente... gi\|194458141, gi... - gi\|194471777\|ref\|ZP_03077761.1\| YfbU domain protein [Salmonella enterica subsp. enterica serovar Ken...	5.0E-71	[1..164]	[1..164]
gi\|238785673, gi... - gi\|77956853\|ref\|ZP_00820928.1\| COG3013: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	7.0E-71	[1..164]	[1..164]
gi\|22125519, gi\|... - gi\|22125519\|ref\|NP_668942.1\| hypothetical protein y1624 [Yersinia pestis KIM], gi\|21958417\|gb\|AAM851... gi\|45442163, gi\|... - gi\|45442163\|ref\|NP_993702.1\| hypothetical protein YP_2374 [Yersinia pestis biovar Microtus str. 9100...	1.0E-70	[1..164]	[2..165]
gi\|238794614, gi... - gi\|77976296\|ref\|ZP_00831797.1\| COG3013: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	2.0E-70	[1..164]	[1..164]
gi\|238799409, gi... - gi\|77960595\|ref\|ZP_00824459.1\| COG3013: Uncharacterized conserved protein [Yersinia mollaretii ATCC ... gi\|77975486, gi\|... - gi\|77975486\|ref\|ZP_00831021.1\| COG3013: Uncharacterized conserved protein [Yersinia frederiksenii AT...	7.0E-70	[1..164]	[1..164]
gi\|26109086, gi\|... - gi\|26248681\|ref\|NP_754721.1\| hypothetical protein c2835 [Escherichia coli CFT073], gi\|26109086\|gb\|AA...	1.0E-69	[1..164]	[28..191]
Y3037_ERWCT - UPF0304 protein ECA3037 OS=Erwinia carotovora subsp. atroseptica GN=ECA3037 PE=3 SV=1 Y3037_PECAS - UPF0304 protein ECA3037 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA3037 ...	2.0E-69	[1..164]	[1..164]
gi\|162139771 - gi\|162139771\|ref\|NP_311205.2\| hypothetical protein ECs3178 [Escherichia coli O157:H7 str. Sakai] gi\|124526459, gi... - gi\|124526459\|ref\|ZP_01698412.1\| YfbU family protein [Escherichia coli B], gi\|124501930\|gb\|EAY49391.1... YFBU_ECOLI - UPF0304 protein yfbU - Escherichia coli YFBU_ECO57 - UPF0304 protein YfbU OS=Escherichia coli O157:H7 GN=yfbU PE=3 SV=2 YFBU_ECOL6 - UPF0304 protein yfbU OS=Escherichia coli O6 GN=yfbU PE=3 SV=1 gi\|194427208, gi... - gi\|75211697\|ref\|ZP_00711776.1\| COG3013: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|190903450, gi... - gi\|75230324\|ref\|ZP_00716814.1\| COG3013: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193068190, gi... - gi\|75238077\|ref\|ZP_00722082.1\| COG3013: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|191170057, gi... - gi\|75243105\|ref\|ZP_00726811.1\| COG3013: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|193062356, gi... - gi\|75259752\|ref\|ZP_00731054.1\| COG3013: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|188487569, gi... - gi\|75512766\|ref\|ZP_00735268.1\| COG3013: Uncharacterized conserved protein [Escherichia coli 53638], ... EG14105 - UPF0304 family protein / Cell death gene, function unknown, UPF0304 family gi\|85675349, gi\|... - gi\|89109114\|ref\|AP_002894.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|194424980, gi... - gi\|83588277\|ref\|ZP_00926902.1\| COG3013: Uncharacterized conserved protein [Escherichia coli 101-1], ... YFBU_SHIB3 - UPF0304 protein YfbU OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yfbU PE=3 SV=1 EG14105 - UPF0304 family protein / Cell death gene, function unknown, UPF0304 family gi\|75196337 - gi\|75196337\|ref\|ZP_00706407.1\| COG3013: Uncharacterized conserved protein [Escherichia coli HS] YFBU_ECOLU - UPF0304 protein YfbU OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfbU PE=3 SV=1 YFBU_ECO7I - UPF0304 protein YfbU OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yfbU PE=3 SV=1 gi\|227887352, gi... - gi\|227887352\|ref\|ZP_04005157.1\| YfbU domain protein [Escherichia coli 83972], gi\|227835702\|gb\|EEJ461... YFBU_ECOBW - UPF0304 protein YfbU OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yfbU PE=3 SV=1 gi\|242377927, gi... - gi\|251785654\|ref\|YP_002999958.1\| hypothetical protein B21_02179 [Escherichia coli BL21], gi\|24237792... gi\|253978371, gi... - gi\|254289064\|ref\|YP_003054812.1\| hypothetical protein ECD_02219 [Escherichia coli BL21(DE3)], gi\|253... gi\|253974204, gi... - gi\|254162303\|ref\|YP_003045411.1\| hypothetical protein ECB_02219 [Escherichia coli B str. REL606], gi... gi\|254794186, gi... - gi\|254794186\|ref\|YP_003079023.1\| hypothetical protein ECSP_3168 [Escherichia coli O157:H7 str. TW143... YFBU_ECOLC - UPF0304 protein YfbU OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yfbU PE=3 SV=1 gi\|161986493 - gi\|161986493\|ref\|YP_311230.2\| hypothetical protein SSON_2351 [Shigella sonnei Ss046] gi\|161950080 - gi\|161950080\|ref\|YP_404051.2\| hypothetical protein SDY_2490 [Shigella dysenteriae Sd197] gi\|168755048, gi... - gi\|189357702\|gb\|EDU76121.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168755048... gi\|168748145, gi... - gi\|188017227\|gb\|EDU55349.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168748145... gi\|168767922, gi... - gi\|189362810\|gb\|EDU81229.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767922... gi\|168761265, gi... - gi\|189368309\|gb\|EDU86725.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168761265... gi\|189001898, gi... - gi\|189001898\|gb\|EDU70884.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168780151... gi\|187771054, gi... - gi\|187771054\|gb\|EDU34898.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168772978... YFBU_ECOL6 - UPF0304 protein YfbU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfbU PE=3 SV=... gi\|161367562 - gi\|161367562\|ref\|NP_288868.2\| hypothetical protein Z3555 [Escherichia coli O157:H7 EDL933] YFBU_ECO5E - UPF0304 protein YfbU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfbU PE=3 SV=1 gi\|208821633, gi... - gi\|208821633\|ref\|ZP_03261953.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|217327308, gi... - gi\|217327308\|ref\|ZP_03443391.1\| YfbU domain protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... YFBU_ECOSE - UPF0304 protein YfbU OS=Escherichia coli (strain SE11) GN=yfbU PE=3 SV=1 YFBU_ECO45 - UPF0304 protein YfbU OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfbU PE=3 SV=1 YFBU_ECO8A - UPF0304 protein YfbU OS=Escherichia coli O8 (strain IAI1) GN=yfbU PE=3 SV=1 YFBU_ECO55 - UPF0304 protein YfbU OS=Escherichia coli (strain 55989 / EAEC) GN=yfbU PE=3 SV=1 YFBU_ECO81 - UPF0304 protein YfbU OS=Escherichia coli O81 (strain ED1a) GN=yfbU PE=3 SV=1 gi\|168798466, gi... - gi\|189378911\|gb\|EDU97327.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC508], gi\|168798466\|... gi\|168787203, gi... - gi\|189372908\|gb\|EDU91324.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC869], gi\|168787203\|... YFBU_ECOL5 - UPF0304 protein YfbU OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfbU PE=3 SV=1 YFBU_ECOSM - UPF0304 protein YfbU OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfbU PE=3 SV=1 YFBU_ECODH - UPF0304 protein YfbU OS=Escherichia coli (strain K12 / DH10B) GN=yfbU PE=3 SV=1 gi\|195935672 - gi\|195935672\|ref\|ZP_03081054.1\| hypothetical protein EscherichcoliO157_04297 [Escherichia coli O157:... gi\|194433304, gi... - gi\|194433304\|ref\|ZP_03065584.1\| YfbU domain protein [Shigella dysenteriae 1012], gi\|194418398\|gb\|EDX... gi\|208733333, gi... - gi\|208812056\|ref\|ZP_03253385.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208729055, gi... - gi\|208809254\|ref\|ZP_03251591.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4206], gi\|20872...	3.0E-69	[1..164]	[1..164]
gi\|58177204, gi\|... - gi\|58177208\|pdb\|1WPB\|P Chain P, Structure Of Escherichia Coli Yfbu Gene Product, gi\|58177207\|pdb\|1WP...	3.0E-69	[1..164]	[9..172]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMTNAQRLI LSNQYKMMTM LDPENAERYR RQQTIVERGF GLQMRELDRD FGEMSEDTCR  60
   61 TIINIMEMHH ALQVSWGNLK EKQDLDERRI SFLGFDAATE SRYLSYVRFM VNTEGRYTHF 120
  121 DSGTHGFNSQ TPMWDKYQRM LAIWQSCPRQ YHLSAVEISQ IINA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	1wpbA
Description:	Structure of Escherichia coli yfbU gene product
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits