YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39654491, gi\|...
Organism:	Escherichia coli
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39654491, gi|....

Description	E-value	Query Range	Subject Range
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	222.0	[0..1]	[237..2]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	219.0	[0..1]	[236..2]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	217.0	[0..1]	[237..2]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	216.0	[0..1]	[237..2]
gi\|85834781, gi\|... - gi\|86147488\|ref\|ZP_01065800.1\| purine nucleoside phosphorylase [Vibrio sp. MED222], gi\|85834781\|gb\|E...	216.0	[0..1]	[237..2]
gi\|84387263, gi\|... - gi\|84387263\|ref\|ZP_00990284.1\| purine nucleoside phosphorylase [Vibrio splendidus 12B01], gi\|8437791...	216.0	[0..1]	[237..2]
DEOD_SALTY - Purine nucleoside phosphorylase deoD-type OS=Salmonella typhimurium GN=deoD PE=3 SV=1 DEOD_SALHS - Purine nucleoside phosphorylase DeoD-type OS=Salmonella heidelberg (strain SL476) GN=deoD PE=3 SV=1 gi\|205336642, gi... - gi\|205336642\|gb\|EDZ23406.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|205331456, gi... - gi\|205331456\|gb\|EDZ18220.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=deoD] [protein=purine nucleoside phosphorylase] [protein_id=YP_005240914.1] [location=4837974.... DEOD_SALTY - Purine nucleoside phosphorylase deoD-type OS=Salmonella typhimurium GN=deoD PE=3 SV=1 DEOD_SALTY - Purine nucleoside phosphorylase DeoD-type OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|197240110, gi... - gi\|197261855\|ref\|ZP_03161929.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica...	216.0	[0..1]	[237..2]
gi\|204926734, gi... - gi\|204926734\|ref\|ZP_03217936.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|213051975 - gi\|213051975\|ref\|ZP_03344853.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|213416954 - gi\|213416954\|ref\|ZP_03350098.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|213427575 - gi\|213427575\|ref\|ZP_03360325.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... DEOD_SALSV - Purine nucleoside phosphorylase DeoD-type OS=Salmonella schwarzengrund (strain CVM19633) GN=deoD PE=... DEOD_SALA4 - Purine nucleoside phosphorylase DeoD-type OS=Salmonella agona (strain SL483) GN=deoD PE=3 SV=1 DEOD_SALPK - Purine nucleoside phosphorylase DeoD-type OS=Salmonella paratyphi A (strain AKU_12601) GN=deoD PE=3 ... gi\|200387495, gi... - gi\|200387495\|ref\|ZP_03214107.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|195632980, gi... - gi\|195632980\|gb\|EDX51434.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|168822113, gi... - gi\|205341429\|gb\|EDZ28193.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... DEOD_SALNS - Purine nucleoside phosphorylase DeoD-type OS=Salmonella newport (strain SL254) GN=deoD PE=3 SV=1 gi\|194469651, gi... - gi\|194469651\|ref\|ZP_03075635.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|167552204, gi... - gi\|205323113\|gb\|EDZ10952.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|205335117, gi... - gi\|205335117\|gb\|EDZ21881.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|197291806, gi... - gi\|197291806\|gb\|EDY31156.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|205348743, gi... - gi\|205348743\|gb\|EDZ35374.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|213974334 - gi\|213974334\|ref\|ZP_03401593.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|214000692 - gi\|214000692\|ref\|ZP_03411427.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... DEOD_SALTI - Purine nucleoside phosphorylase DeoD-type OS=Salmonella typhi GN=deoD PE=3 SV=1 gi\|213584179 - gi\|213584179\|ref\|ZP_03366005.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|213616439 - gi\|213616439\|ref\|ZP_03372265.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|16763365 - gi\|16763365\|ref\|NP_458982.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica se... gi\|213650708 - gi\|213650708\|ref\|ZP_03380761.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... gi\|29140482, gi\|... - gi\|29144843\|ref\|NP_808185.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica se... gi\|213852200 - gi\|213852200\|ref\|ZP_03381732.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... DEOD_SALPA - Purine nucleoside phosphorylase DeoD-type OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=d... gi\|237729284, gi... - gi\|237729284\|ref\|ZP_04559765.1\| purine nucleoside phosphorylase deoD-type [Citrobacter sp. 30_2], gi... gi\|238910729 - gi\|238910729\|ref\|ZP_04654566.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica... DEOD_SALPA - Purine nucleoside phosphorylase deoD-type OS=Salmonella paratyphi A GN=deoD PE=3 SV=1 DEOD_SALTI - Purine nucleoside phosphorylase deoD-type OS=Salmonella typhi GN=deoD PE=3 SV=1	216.0	[0..1]	[237..2]
gi\|77960324 - gi\|77960324\|ref\|ZP_00824201.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia mollaretii ATCC 43...	216.0	[0..1]	[237..2]
gi\|227885127, gi... - gi\|227885127\|ref\|ZP_04002932.1\| purine-nucleoside phosphorylase [Escherichia coli 83972], gi\|2278379... gi\|26111707, gi\|... - gi\|26251274\|ref\|NP_757314.1\| purine nucleoside phosphorylase [Escherichia coli CFT073], gi\|26111707\|...	216.0	[0..1]	[237..21]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPHINAEMG DFADVVLMPG DPLRAKYIAE TFLEDAREVN NVRGMLGFTG TYKGRKISVM  60
   61 GHGMGIPSCS IYTKELITDF GVKKIIRVGS CGAVLPHVKL RDVVIGMGAC TDSKVNRIRF 120
  121 KDHDFAAIAD FDMVRNAVDA AKALGIDARV GNLFSADLFY SPDGEMFDVM EKYGILGVEM 180
  181 EAAGIYGVAA EFGAKALTIC TVSDHIRTHE QTTAAERQTT FNDMIKIALE SVLLGDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.154902
Match:	1otxA
Description:	Purine Nucleoside Phosphorylase M64V mutant
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: