YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889948, gi\|...
Organism:	Escherichia coli
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889948, gi|....

Description	E-value	Query Range	Subject Range
gi\|84317886 - gi\|84317886\|ref\|ZP_00966321.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|107104347 - gi\|107104347\|ref\|ZP_01368265.1\| hypothetical protein PaerPA_01005422 [Pseudomonas aeruginosa PACS2] gi\|53726706 - gi\|53726706\|ref\|ZP_00347670.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	226.0	[0..4]	[223..38]
gi\|84324051 - gi\|84324051\|ref\|ZP_00972116.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	225.0	[0..4]	[223..38]
gi\|7449877, gi\|6... - gi\|7449877\|pir\|\|C65112 sigma cross-reacting protein 27A - Escherichia coli (strain K-12), gi\|606148\|... gi\|24114497, gi\|... - ref\|NP_709007.1\| sigma cross-reacting protein 27A (SCRP-27A) [Shigella flexneri 2a str. 301], gb\|AA... gi\|254038374, gi... - gi\|254038374\|ref\|ZP_04872432.1\| sigma cross-reacting protein 27A [Escherichia sp. 1_1_43], gi\|226839... gi\|16131099, gi\|... - gb\|AAC76241.1\| sigma cross-reacting protein 27A (SCRP-27A) [Escherichia coli K12], gi\|16131099\|ref\|... gi\|606148\|gb\|AAA... - sigma cross-reacting protein 27A [Escherichia coli]	220.0	[0..3]	[222..1]
gi\|74313746, gi\|... - gi\|74313746\|ref\|YP_312165.1\| isoprenoid biosynthesis protein [Shigella sonnei Ss046], gi\|73857223\|gb... gi\|81246965, gi\|... - gi\|82545554\|ref\|YP_409501.1\| isoprenoid biosynthesis protein [Shigella boydii Sb227], gi\|81246965\|gb...	220.0	[0..3]	[222..1]
gi\|218774576, gi... - gi\|218894347\|ref\|YP_002443217.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|9951555, gi\|1... - gi\|9951555\|gb\|AAG08630.1\|AE004937_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|116053392, gi... - gi\|116053392\|ref\|YP_793717.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Pse... gi\|11348313 - pir\|\|G82989 conserved hypothetical protein PA5245 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|194549043, gi... - gi\|254238058\|ref\|ZP_04931381.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19...	219.0	[0..5]	[223..1]
gi\|49078134 - gi\|49078134\|gb\|AAT49754.1\| PA5245 [synthetic construct]	219.0	[0..5]	[223..1]
gi\|152983637, gi... - gi\|94417720\|ref\|ZP_01297537.1\| hypothetical protein PaerP_01000498 [Pseudomonas aeruginosa PA7], gi\|...	218.0	[0..5]	[226..1]
gi\|209757956, gi... - pir\|\|C85985 sigma cross-reacting protein 27A (SCRP-27A) [imported] - Escherichia coli (strain O157:H... gi\|15803749, gi\|... - gi\|15803749\|ref\|NP_289783.1\| isoprenoid biosynthesis protein [Escherichia coli O157:H7 EDL933], gi\|1... gi\|13363561 - gi\|13363561\|dbj\|BAB37511.1\| sigma cross-reacting protein 27A [Escherichia coli O157:H7] gi\|13363561 - gi\|13363561\|dbj\|BAB37511.1\| sigma cross-reacting protein 27A [Escherichia coli O157:H7 str. Sakai]	218.0	[0..3]	[222..1]
gi\|81242671, gi\|... - gi\|82778523\|ref\|YP_404872.1\| isoprenoid biosynthesis protein [Shigella dysenteriae Sd197], gi\|812426...	218.0	[0..3]	[222..1]
gi\|67155425 - gi\|67155425\|ref\|ZP_00417053.1\| ThiJ/PfpI [Azotobacter vinelandii AvOP] gi\|67155425, gi\|... - gi\|67155425\|ref\|ZP_00417053.1\| ThiJ/PfpI [Azotobacter vinelandii AvOP], gi\|67087226\|gb\|EAM06693.1\| T...	217.0	[0..5]	[221..12]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XSLITXKKIG VILSGCGVYD GSEIHEAVLT LLAISRSGAQ AVCFAPDKQQ VDVINHLTGE  60
   61 AXTETRNVLI EAARITRGEI RPLAQADAAE LDALIVPGGF GAAKNLSNFA SLGSECTVDR 120
  121 ELKALAQAXH QAGKPLGFXX IAPAXLPKIF DFPLRLTIGT DIDTAEVLEE XGAEHVPCPV 180
  181 DDIVVDEDNK IVTTPAYXLA QNIAEAASGI DKLVSRVLVL AEEGGSHHHH HH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1vhqA
Description:	Crystal structure of enhancing lycopene biosynthesis protein 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
protein binding	1.06565672438103	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
nucleic acid binding	0.59602498623822	bayes_pls_golite062009
binding	0.588714599255874	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: