YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40890023, gi\|...
Organism:	Escherichia coli
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40890023, gi|....

Description	E-value	Query Range	Subject Range
gi\|227884993, gi... - gi\|227884993\|ref\|ZP_04002798.1\| dephospho-CoA kinase [Escherichia coli 83972], gi\|227838131\|gb\|EEJ48... COAE_ECOL6 - Dephospho-CoA kinase OS=Escherichia coli O6 GN=coaE PE=3 SV=1 COAE_ECOL6 - Dephospho-CoA kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaE PE=3 SV=...	183.0	[0..3]	[208..1]
gi\|78366242, gi\|... - gi\|78366242\|ref\|ZP_00836524.1\| Dephospho-CoA kinase [Shewanella sp. PV-4], gi\|78361830\|gb\|EAP03652.1...	183.0	[0..1]	[201..1]
COAE_GEOKA - Dephospho-CoA kinase OS=Geobacillus kaustophilus (strain HTA426) GN=coaE PE=3 SV=1 COAE_GEOKA - Dephospho-CoA kinase OS=Geobacillus kaustophilus GN=coaE PE=3 SV=1	180.0	[0..3]	[195..1]
COAE_CARHZ - Dephospho-CoA kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) ...	180.0	[0..6]	[193..6]
gi\|238725103, gi... - gi\|77976087\|ref\|ZP_00831620.1\| COG0237: Dephospho-CoA kinase [Yersinia frederiksenii ATCC 33641], gi...	180.0	[0..3]	[200..1]
gi\|48868871, gi\|... - gi\|68249477\|ref\|YP_248589.1\| dephospho-CoA kinase [Haemophilus influenzae 86-028NP], gi\|68057676\|gb\|...	179.0	[0..3]	[204..5]
gi\|229845942, gi... - gi\|229845942\|ref\|ZP_04466054.1\| dephospho-CoA kinase [Haemophilus influenzae 7P49H1], gi\|229810946\|g... gi\|46129141 - gi\|46129141\|ref\|ZP_00155820.2\| COG0237: Dephospho-CoA kinase [Haemophilus influenzae R2846]	179.0	[0..3]	[202..17]
SO0413 - kinase putative COAE_SHEON - Dephospho-CoA kinase OS=Shewanella oneidensis (strain MR-1) GN=coaE PE=3 SV=1	179.0	[0..1]	[206..1]
COAE_SHIFL - Dephospho-CoA kinase OS=Shigella flexneri GN=coaE PE=3 SV=1 gi\|30061670, gi\|... - gi\|30061670\|ref\|NP_835841.1\| dephospho-CoA kinase [Shigella flexneri 2a str. 2457T], gi\|30039912\|gb\|... gi\|24111548, gi\|... - gi\|24111548\|ref\|NP_706058.1\| dephospho-CoA kinase [Shigella flexneri 2a str. 301], gi\|24050307\|gb\|AA... gi\|110804166, gi... - gi\|110804166\|ref\|YP_687686.1\| dephospho-CoA kinase [Shigella flexneri 5 str. 8401], gi\|110613714\|gb\|...	179.0	[0..3]	[208..1]
gi\|113890537, gi... - gi\|78690768\|ref\|ZP_00855407.1\| Dephospho-CoA kinase [Shewanella sp. MR-7], gi\|78509824\|gb\|EAP23207.1...	179.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRYIVALT GGIGSGKSTV ANAFADLGIN VIDADIIARQ VVEPGAPALH AIADHFGANM  60
   61 IAADGTLQRR ALRERIFANP EEKNWLNALL HPLIQQETQH QIQQATSPYV LWVVPLLVEN 120
  121 SLYKKANRVL VVDVSPETQL KRTMQRDDVT REHVEQILAA QATREARLAV ADDVIDNNGA 180
  181 PDAIASDVAR LHAHYLQLAS QFVSQEKPEG GSHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.39794
Match:	1vhlA
Description:	Crystal structure of dephospho-CoA kinase with adenosine-5'-diphosphate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
dephospho-CoA kinase activity	0.656417599253142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: