YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186893520, gi...
Organism:	Yersinia pseudotuberculosis PB1/+
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186893520, gi....

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	1.0E-36	[1..108]	[39..146]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	2.0E-36	[1..108]	[39..146]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	1.0E-35	[1..108]	[1..108]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	2.0E-35	[1..108]	[1..108]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	8.0E-35	[1..108]	[34..141]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	8.0E-35	[2..108]	[3..109]
gi\|237702791, gi... - gi\|237702791\|ref\|ZP_04533272.1\| thioredoxin 1 [Escherichia sp. 3_2_53FAA], gi\|226902962\|gb\|EEH89221.... gi\|148185\|gb\|AAA... - thioredoxin [Escherichia coli] gi\|227888636, gi... - gi\|227888636\|ref\|ZP_04006441.1\| thioredoxin [Escherichia coli 83972], gi\|227834475\|gb\|EEJ44941.1\| th... gi\|226838684, gi... - gi\|254038993\|ref\|ZP_04873044.1\| thioredoxin 1 [Escherichia sp. 1_1_43], gi\|226838684\|gb\|EEH70712.1\| ... gi\|209753510, gi... - gi\|25282746\|pir\|\|C86064 thioredoxin 1 [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|30043185, gi\|... - gi\|30064924\|ref\|NP_839095.1\| thioredoxin [Shigella flexneri 2a str. 2457T], gi\|30043185\|gb\|AAP18906.... gi\|15833968, gi\|... - gi\|15833968\|ref\|NP_312741.1\| thioredoxin [Escherichia coli O157:H7], gi\|13364189\|dbj\|BAB38137.1\| thi... gi\|1790215, gi\|1... - gb\|AAC76786.1\| thioredoxin 1; thioredoxin 1, redox factor [Escherichia coli K12], ref\|NP_418228.1\| ... gi\|12518641, gi\|... - gi\|15804371\|ref\|NP_290411.1\| thioredoxin [Escherichia coli O157:H7 EDL933], gi\|12518641\|gb\|AAG58975.... gi\|81247546, gi\|... - gi\|82546135\|ref\|YP_410082.1\| thioredoxin [Shigella boydii Sb227], gi\|81247546\|gb\|ABB68254.1\| thiored... gi\|56480434, gi\|... - gi\|56480434\|ref\|NP_709584.2\| thioredoxin [Shigella flexneri 2a str. 301], gi\|56383985\|gb\|AAN45291.2\|... gi\|74314295, gi\|... - gi\|74314295\|ref\|YP_312714.1\| thioredoxin [Shigella sonnei Ss046], gi\|73857772\|gb\|AAZ90479.1\| thiored... gi\|81243186, gi\|... - gi\|82779038\|ref\|YP_405387.1\| thioredoxin [Shigella dysenteriae Sd197], gi\|81243186\|gb\|ABB63896.1\| th... gi\|15833968, gi\|... - gi\|15833968\|ref\|NP_312741.1\| thioredoxin [Escherichia coli O157:H7 str. Sakai], gi\|13364189\|dbj\|BAB3...	9.0E-35	[1..108]	[19..126]
gi\|110617077, gi... - gi\|110807529\|ref\|YP_691049.1\| thioredoxin [Shigella flexneri 5 str. 8401], gi\|110617077\|gb\|ABF05744.... gi\|68304124\|gb\|A... - TrxA [Escherichia coli] gi\|110644108, gi... - gi\|110644108\|ref\|YP_671838.1\| thioredoxin [Escherichia coli 536], gi\|110345700\|gb\|ABG71937.1\| thiore... gi\|68304124 - gi\|68304124\|gb\|AAY89720.1\| TrxA [Escherichia coli] tr\|A0A0G3HR77\|A0... - Thioredoxin 1 protein OS=Escherichia coli (strain K12) GN=trxA PE=4 SV=1 gi\|26250519, gi\|... - gi\|26250519\|ref\|NP_756559.1\| thioredoxin [Escherichia coli CFT073], gi\|26110949\|gb\|AAN83133.1\|AE0167... gi\|91213301, gi\|... - gi\|91213301\|ref\|YP_543287.1\| thioredoxin [Escherichia coli UTI89], gi\|91074875\|gb\|ABE09756.1\| thiore... gi\|24115074, gi\|... - ref\|NP_709584.1\| thioredoxin 1 [Shigella flexneri 2a str. 301], gb\|AAN45291.1\| thioredoxin 1 [Shige...	1.0E-34	[1..108]	[36..143]
gi\|33576644, gi\|... - gi\|33602206\|ref\|NP_889766.1\| thioredoxin 1 [Bordetella bronchiseptica RB50], gi\|33576644\|emb\|CAE3372...	1.0E-34	[1..108]	[34..141]
gi\|45520598, gi\|... - gi\|91776641\|ref\|YP_546397.1\| thioredoxin [Methylobacillus flagellatus KT], gi\|91710628\|gb\|ABE50556.1...	1.0E-34	[1..108]	[1..108]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKIIHLSD DSFDTDVLKA SGLVLVDFWA EWCGPCKMIA PILDEIAEEY EGRLTIAKLN  60
   61 IDDNQGTAPK YGIRGIPTLL LFRDGEVVAT KVGALSKGQL KAFLDANL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits