YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186895104, gi...
Organism:	Yersinia pseudotuberculosis PB1/+
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186895104, gi....

Description	E-value	Query Range	Subject Range
gi\|205331965, gi... - gi\|205331965\|gb\|EDZ18729.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|168462551, gi... - gi\|195634185\|gb\|EDX52537.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|205342676, gi... - gi\|205342676\|gb\|EDZ29440.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|194404199, gi... - gi\|194445536\|ref\|YP_002041180.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|161613526, gi... - gi\|161613526\|ref\|YP_001587491.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|205327877, gi... - gi\|205327877\|gb\|EDZ14641.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... FLHB_SALTY - Flagellar biosynthetic protein FlhB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... lcl\|NC_016856.1_... - [gene=flhB] [protein=flagellar biosynthesis protein FlhB] [protein_id=YP_005237881.1] [location=comp... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|194472731, gi... - gi\|194472731\|ref\|ZP_03078715.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ente... gi\|197251527, gi... - gi\|197251527\|ref\|YP_002146107.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... gi\|238912509 - gi\|238912509\|ref\|ZP_04656346.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente...	0.0	[1..382]	[1..382]
gi\|213999608 - gi\|213999608\|ref\|ZP_03410343.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16760863 - gi\|16760863\|ref\|NP_456480.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|213583527 - gi\|213583527\|ref\|ZP_03365353.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|213426385 - gi\|213426385\|ref\|ZP_03359135.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16503160, gi\|... - gi\|25322221\|pir\|\|AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella enterica subsp. ... gi\|213163285 - gi\|213163285\|ref\|ZP_03348995.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|29141445, gi\|... - gi\|29141445\|ref\|NP_804787.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	0.0	[1..382]	[1..382]
gi\|62180491, gi\|... - gi\|62180491\|ref\|YP_216908.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|224468109, gi... - gi\|224583582\|ref\|YP_002637380.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica...	0.0	[1..382]	[1..382]
gi\|197093569, gi... - gi\|197362092\|ref\|YP_002141729.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|56127423, gi\|... - gi\|56413166\|ref\|YP_150241.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	0.0	[1..382]	[1..382]
gi\|152959095, gi... - gi\|77628864\|ref\|ZP_00791450.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Yersinia pse...	0.0	[1..386]	[1..386]
Q3V7P4\|Q3V7P4_YERPS - Flagellar biosynthetic/export protein FlhB - Yersinia pseudotuberculosis gi\|51596001, gi\|... - gi\|51596001\|ref\|YP_070192.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 329...	0.0	[1..386]	[1..386]
gi\|77965592, gi\|... - gi\|78064847\|ref\|YP_367616.1\| flagellar biosynthesis protein FlhB [Burkholderia sp. 383], gi\|77965592...	0.0	[1..386]	[1..386]
gi\|91689601, gi\|... - gi\|91785647\|ref\|YP_560853.1\| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400], gi...	0.0	[1..386]	[1..386]
gi\|49611156, gi\|... - gi\|50120630\|ref\|YP_049797.1\| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum SCRI10...	0.0	[1..382]	[1..382]
gi\|116688291, gi... - gi\|67668232\|ref\|ZP_00465415.1\| Flagellar biosynthetic protein FlhB [Burkholderia cenocepacia HI2424]... gi\|67659353, gi\|... - gi\|67659353\|ref\|ZP_00456716.1\| Flagellar biosynthetic protein FlhB [Burkholderia cenocepacia AU 1054...	0.0	[1..386]	[1..386]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDSDQEKS EEPTASKLEK AREKGQIPRS RELTSMLMLG AGLTILWMSG ESMARQLSAM  60
   61 VAQGLHFDHS MVSNDKQMLR QIGMLLRQTL LAMLPIFAGL VIVALAVPML LGGVLFSGES 120
  121 IKFDLKRMSP VAGLKRMFSS QALAELLKAI LKATLVGW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [159-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTGLFLWHNW PDMMRLIAAP PVAALGDALH LIIFCGLVVV LGLSPMVGFD VFYQITSHIK  60
   61 KLRMTKQDIR DEFKNQEGDP HVKGRIRQQQ RAMARRRMMV DVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [262-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KADVIVTNPT HYAVALQYNE SKMSAPKVLA KGAGAVALRI RELGAEHRIP LLEAPPLARA  60
   61 LFRHSEVGQH IPATLYAAVA EVLAWVYQLK RWKREGGLIP KKPEHLPVPE ALDFATESET 120
  121 KSETD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits