YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165925337, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165925337, gi....

Description	E-value	Query Range	Subject Range
Y794_SODGM - UPF0250 protein SG0794 OS=Sodalis glossinidius (strain morsitans) GN=SG0794 PE=3 SV=1	1.0E-33	[1..87]	[1..87]
gi\|238790456, gi... - gi\|77973027\|ref\|ZP_00828580.1\| COG2921: Uncharacterized conserved protein [Yersinia frederiksenii AT...	6.0E-33	[1..87]	[1..87]
gi\|58176674 - gi\|58176674\|pdb\|1RWU\|A Chain A, Solution Structure Of Conserved Protein Ybed From E. Coli	3.0E-32	[1..87]	[23..109]
Y1293_PHOLL, YC9... - (Q7N765) Hypothetical UPF0250 protein plu1293, UPF0250 protein plu1293 OS=Photorhabdus luminescens s... Y1293_PHOLL - UPF0250 protein plu1293 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	3.0E-32	[1..87]	[1..87]
Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus GN=VP0718 PE=3 SV=1 Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0718 PE=...	4.0E-32	[2..87]	[7..92]
gi\|77962167 - gi\|77962167\|ref\|ZP_00825991.1\| COG2921: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	5.0E-32	[1..87]	[1..87]
Y945_VIBCH - UPF0250 protein VC_0945 OS=Vibrio cholerae GN=VC_0945 PE=3 SV=1 Y1669_VIBC3 - UPF0250 protein VC0395_A0469/VC395_0960 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classica... gi\|254848078, gi... - gi\|75830692\|ref\|ZP_00759965.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae MO10], gi... gi\|116219079, gi... - gi\|75818355\|ref\|ZP_00748530.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|75822447, gi\|... - gi\|75822447\|ref\|ZP_00752071.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae RC385], g... gi\|124115695, gi... - gi\|153213861\|ref\|ZP_01949067.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115695\|... gi\|153223144, gi... - gi\|153223144\|ref\|ZP_01953682.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241183... gi\|121629678, gi... - gi\|75816442\|ref\|ZP_00746912.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae V52], gi\|... gi\|153817213, gi... - gi\|153817213\|ref\|ZP_01969880.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|126520361, gi... - gi\|229510877\|ref\|ZP_04400356.1\| hypothetical protein VCE_002284 [Vibrio cholerae B33], gi\|229350842\|... Y901_VIBCM - UPF0250 protein VCM66_0901 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_0901 PE=3 SV=1 gi\|229505453, gi... - gi\|229505453\|ref\|ZP_04394963.1\| hypothetical protein VCF_000661 [Vibrio cholerae BX 330286], gi\|2293... gi\|229512960, gi... - gi\|229512960\|ref\|ZP_04402426.1\| hypothetical protein VCB_000603 [Vibrio cholerae TMA 21], gi\|2293498... gi\|229344713, gi... - gi\|229517998\|ref\|ZP_04407442.1\| hypothetical protein VCC_002022 [Vibrio cholerae RC9], gi\|229344713\|... gi\|229523261, gi... - gi\|229523261\|ref\|ZP_04412668.1\| hypothetical protein VIF_000117 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229525557, gi... - gi\|229525557\|ref\|ZP_04414962.1\| hypothetical protein VCA_003189 [Vibrio cholerae bv. albensis VL426]... gi\|229333731, gi... - gi\|229529957\|ref\|ZP_04419347.1\| hypothetical protein VCG_003063 [Vibrio cholerae 12129(1)], gi\|22933... gi\|150424479, gi... - gi\|254285617\|ref\|ZP_04960581.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|229371127, gi... - gi\|229608472\|ref\|YP_002879120.1\| hypothetical protein VCD_003390 [Vibrio cholerae MJ-1236], gi\|22937... gi\|148875549, gi... - gi\|153828933\|ref\|ZP_01981600.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887554... Y945_VIBCH - UPF0250 protein VC_0945 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|149740152, gi... - gi\|153826129\|ref\|ZP_01978796.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740152...	6.0E-32	[2..87]	[7..92]
gi\|77979029 - gi\|77979029\|ref\|ZP_00834451.1\| COG2921: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	6.0E-32	[1..87]	[1..87]
gi\|77957579 - gi\|77957579\|ref\|ZP_00821631.1\| COG2921: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	6.0E-32	[1..87]	[1..87]
Y902_VIBVY - UPF0250 protein VV0902 OS=Vibrio vulnificus (strain YJ016) GN=VV0902 PE=3 SV=1 Y282_VIBVU - UPF0250 protein VV1_0282 OS=Vibrio vulnificus GN=VV1_0282 PE=3 SV=1 Y282_VIBVU - UPF0250 protein VV1_0282 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_0282 PE=3 SV=1	7.0E-32	[2..87]	[7..92]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKLNELLE FPCSFTYKVM GIAEPQLVDQ VVEVVQRHAP GEYTPQVKPS SKGNYHSVSI  60
   61 TITATHIDQV ETLYEELGNL ELVKMVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1rwuA
Description:	Solution structure of conserved protein YbeD from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits