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View Structure Prediction Details

Protein: gi|208815105, gi...
Organism: Escherichia coli O157:H7 str. EC4045
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208815105, gi....

Description E-value Query
Range
Subject
Range
gi|213999925 - gi|213999925|ref|ZP_03410660.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp...
gi|213649146 - gi|213649146|ref|ZP_03379199.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp...
gi|56128399, gi|... - gi|56414142|ref|YP_151217.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp. e...
lcl|NC_016856.1_... - [gene=cydB] [protein=cytochrome d terminal oxidase polypeptide subunit II] [protein_id=YP_005236462....
gi|205322564, gi... - gi|205322564|gb|EDZ10403.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|161364390, gi... - gi|161615026|ref|YP_001588991.1| hypothetical protein SPAB_02786 [Salmonella enterica subsp. enteric...
gi|29138178, gi|... - gi|29142547|ref|NP_805889.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp. e...
gi|205347173, gi... - gi|205347173|gb|EDZ33804.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|16759680 - gi|16759680|ref|NP_455297.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp. e...
gi|168240599, gi... - gi|205340298|gb|EDZ27062.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|16501973, gi|... - gi|25285480|pir||AI0591 cytochrome d ubiquinol oxidase chain II [imported] - Salmonella enterica sub...
gi|168238891, gi... - gi|197288371|gb|EDY27752.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|16764111, gi|... - gi|16764111|ref|NP_459726.1| cytochrome d terminal oxidase polypeptide subunit II [Salmonella typhim...
gi|205328885, gi... - gi|205328885|gb|EDZ15649.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|238911673 - gi|238911673|ref|ZP_04655510.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp...
gi|205352005, gi... - gi|205352005|ref|YP_002225806.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subs...
gi|204930081, gi... - gi|204930081|ref|ZP_03221102.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subs...
gi|200390926, gi... - gi|200390926|ref|ZP_03217537.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subs...
gi|198244832, gi... - gi|198244832|ref|YP_002214711.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica sub...
gi|213425390 - gi|213425390|ref|ZP_03358140.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp...
gi|213423948 - gi|213423948|ref|ZP_03356928.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp...
gi|213051759 - gi|213051759|ref|ZP_03344637.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subsp...
gi|206707988, gi... - gi|207856185|ref|YP_002242836.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subs...
gi|194450450, gi... - gi|194450450|ref|YP_002044775.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica sub...
gi|194443845, gi... - gi|194443845|ref|YP_002039982.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica sub...
gi|168820124, gi... - gi|205343253|gb|EDZ30017.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|168467696, gi... - gi|195629191|gb|EDX48559.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subsp. e...
gi|197363064, gi... - gi|197363064|ref|YP_002142701.1| cytochrome d ubiquinol oxidase subunit II [Salmonella enterica subs...
gi|197264628, gi... - gi|197264628|ref|ZP_03164702.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica subs...
gi|197247810, gi... - gi|197247810|ref|YP_002145702.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica sub...
gi|194709910, gi... - gi|194734408|ref|YP_002113849.1| cytochrome d ubiquinol oxidase, subunit II [Salmonella enterica sub...
413.0 [0..1] [379..1]
gi|157158603, gi... - gi|75189755|ref|ZP_00703022.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
412.0 [0..1] [379..1]
gi|62179315, gi|... - gi|62179315|ref|YP_215732.1| cytochrome d terminal oxidase polypeptide subunit II [Salmonella enteri...
412.0 [0..1] [379..1]
gi|82776011, gi|... - gi|82776011|ref|YP_402358.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella dysenter...
411.0 [0..1] [379..1]
gi|34420278 - gi|34420278|gb|AAQ67423.1| cytochrome d subunit B [Klebsiella oxytoca]
409.0 [0..1] [379..1]
gi|1926319 - gi|1926319|emb|CAA71118.1| subunit II of cytochrome bd [Klebsiella pneumoniae]
409.0 [0..1] [379..1]
gi|113969584, gi... - gi|82495198|ref|ZP_00880775.1| Cytochrome bd ubiquinol oxidase, subunit II [Shewanella sp. MR-4], gi...
gi|78686234, gi|... - gi|78686234|ref|ZP_00851004.1| Cytochrome bd ubiquinol oxidase, subunit II [Shewanella sp. ANA-3], g...
gi|78689587, gi|... - gi|78689587|ref|ZP_00854247.1| Cytochrome bd ubiquinol oxidase, subunit II [Shewanella sp. MR-7], gi...
409.0 [0..1] [379..1]
gi|69949673, gi|... - gi|69949673|ref|ZP_00637670.1| Cytochrome bd ubiquinol oxidase, subunit II [Shewanella frigidimarina...
409.0 [0..1] [379..1]
gi|28806041, gi|... - gi|28897828|ref|NP_797433.1| cytochrome d ubiquinol oxidase, subunit II [Vibrio parahaemolyticus RIM...
gi|28806041 - gi|28806041|dbj|BAC59317.1| cytochrome d ubiquinol oxidase, subunit II [Vibrio parahaemolyticus RIMD...
408.0 [0..1] [379..1]
gi|167057035, gi... - gi|167424186|ref|ZP_02315939.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar M...
gi|166962393, gi... - gi|167419652|ref|ZP_02311405.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar O...
gi|186697575, gi... - gi|186894549|ref|YP_001871661.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pseudotubercul...
gi|169751719, gi... - gi|170025185|ref|YP_001721690.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pseudotubercul...
Q66D97|Q66D97_YERPS - Cytochrome D ubiquinol oxidase subunit II - Yersinia pseudotuberculosis
gi|149366882, gi... - gi|149366882|ref|ZP_01888916.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis CA88-4125...
gi|108813040, gi... - gi|229903481|ref|ZP_04518594.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Nepal516]...
gi|162351299, gi... - gi|77636423|ref|ZP_00798497.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Yersinia pesti...
gi|152961444, gi... - gi|77632111|ref|ZP_00794697.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Yersinia pseud...
gi|165924808, gi... - gi|165924808|ref|ZP_02220640.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar O...
gi|166211787, gi... - gi|166211787|ref|ZP_02237822.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar A...
gi|165913696, gi... - gi|89105197|ref|ZP_01177721.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Yersinia pesti...
gi|166011570, gi... - gi|166011570|ref|ZP_02232468.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar A...
gi|229841054, gi... - gi|229841054|ref|ZP_04461213.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis biovar Or...
gi|229843158, gi... - gi|229843158|ref|ZP_04463304.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis biovar Or...
gi|229703880, gi... - gi|229893995|ref|ZP_04509181.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Pestoides...
gi|22126938, gi|... - gi|22126938|ref|NP_670361.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis KIM], gi|219...
gi|145599843, gi... - gi|145599843|ref|YP_001163919.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Pestoide...
gi|25285476 - pir||AF0137 cytochrome D ubiquinol oxidase chain II (EC 1.10.3.-) [imported] - Yersinia pestis (stra...
gi|16121418, gi|... - gi|218928286|ref|YP_002346161.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis CO92], g...
gi|51588778, gi|... - gi|51595496|ref|YP_069687.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pseudotuberculosis ...
407.0 [0..1] [379..1]

Back

Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDYEVLRFI WWLLVGVLLI GFAVTDGFDM GVGMLTRFLG RNDTERRIMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA AAFSGFYVAM ILVLASLFFR PVGFDYRSKI E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETRWRNMWDW GIFIGSFVPP LVIGVAFGNL LQGVPFNVDE YLRLYYTGNF FQLLNPFGLL  60
   61 AGVVSVGMII TQGATYLQMR TVGELHLRTR ATAQVAALVT LVCFALAGVW VMYGIDGYVV 120
  121 KSTMDHYAAS NPLNKEVVRE AGAWLVNFNN TPILWAIPAL GVVLPLLTIL TARMDKAAWA 180
  181 FVFSSLTLAC IILTAGIAMF PFVMPSSTM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [321-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASLTMWDA TSSQLTLNVM TWVAVVLVPI ILLYTAWCYW KMFGRITKED IERNTHSLY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle