YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167055789, gi...
Organism:	Yersinia pestis biovar Mediaevalis str. K1973002
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167055789, gi....

Description	E-value	Query Range	Subject Range
gi\|77963143, gi\|... - gi\|77963143\|ref\|ZP_00826955.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia mo...	3.0E-38	[1..188]	[1..188]
GMHBB_PASMU - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Pasteurella multocida (strain Pm70)... GMHB_PASMU - D,D-heptose 1,7-bisphosphate phosphatase OS=Pasteurella multocida GN=gmhB PE=3 SV=1	8.0E-38	[5..186]	[2..182]
gi\|238724465, gi... - gi\|77972743\|ref\|ZP_00828302.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia fr...	8.0E-38	[1..186]	[1..186]
gi\|75428804, gi\|... - gi\|75428804\|ref\|ZP_00731919.1\| histidinol phosphatase and related phosphatases [Actinobacillus succi...	1.0E-37	[5..188]	[2..184]
gi\|238784910, gi... - gi\|77957720\|ref\|ZP_00821769.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia be...	2.0E-37	[1..188]	[1..188]
gi\|238792723, gi... - gi\|77977716\|ref\|ZP_00833157.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia in...	2.0E-37	[1..188]	[1..188]
gi\|91070845, gi\|... - gi\|91209271\|ref\|YP_539257.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli UTI89], gi\|9... gi\|215263434, gi... - gi\|215485362\|ref\|YP_002327793.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O127:H6 ... gi\|110342013, gi... - gi\|110640421\|ref\|YP_668149.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli 536], gi\|11... gi\|218425640, gi... - gi\|218688076\|ref\|YP_002396288.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli ED1a], g... GMHB_ECOL6 - D,D-heptose 1,7-bisphosphate phosphatase OS=Escherichia coli O6 GN=gmhB PE=3 SV=1 gi\|218557142, gi... - gi\|218557142\|ref\|YP_002390055.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli S88], gi... gi\|115511609, gi... - gi\|117622485\|ref\|YP_851398.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli APEC O1], g... GMHBB_ECOL6 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Escherichia coli O6:H1 (strain CFT0... gi\|190908279, gi... - gi\|75241733\|ref\|ZP_00725570.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|227838134, gi... - gi\|227884885\|ref\|ZP_04002690.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli 83972], g... gi\|226902272, gi... - gi\|237704360\|ref\|ZP_04534841.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia sp. 3_2_53FAA]...	3.0E-37	[1..188]	[1..188]
gi\|194421154, gi... - gi\|83584738\|ref\|ZP_00923402.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia...	3.0E-37	[1..188]	[1..188]
gi\|4902943, gi\|8... - gi\|89107081\|ref\|AP_000861.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli str. K-12 su... GMHBB_SHIFL - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Shigella flexneri GN=gmhB PE=3 SV=1 gi\|168758725, gi... - gi\|189354513\|gb\|EDU72932.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 str. ... gi\|188999603, gi... - gi\|188999603\|gb\|EDU68589.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 str. ... gi\|168769969, gi... - gi\|189361031\|gb\|EDU79450.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 str. ... gi\|30039999, gi\|... - gi\|30061757\|ref\|NP_835928.1\| D,D-heptose 1,7-bisphosphate phosphatase [Shigella flexneri 2a str. 245... gi\|15829456, gi\|... - gi\|15829456\|ref\|NP_308229.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 str.... gi\|170079837, gi... - gi\|170079837\|ref\|YP_001729157.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli str. K-1... gi\|24111636, gi\|... - gi\|24111636\|ref\|NP_706146.1\| D,D-heptose 1,7-bisphosphate phosphatase [Shigella flexneri 2a str. 301... gi\|110613800, gi... - gi\|110804252\|ref\|YP_687772.1\| D,D-heptose 1,7-bisphosphate phosphatase [Shigella flexneri 5 str. 840... gi\|189371089, gi... - gi\|189371089\|gb\|EDU89505.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 str. ... gi\|12512931, gi\|... - gi\|15799882\|ref\|NP_285894.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 EDL9... gi\|208728195, gi... - gi\|208808394\|ref\|ZP_03250731.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 s... EG11736 - D,D-heptose 1,7-bisphosphate phosphatase / Heptose 1,7-bisphosphate phosphatase; LPS biosynthesis; H... EG11736 - D,D-heptose 1,7-bisphosphate phosphatase / Heptose 1,7-bisphosphate phosphatase; LPS biosynthesis; H... gi\|195939897 - gi\|195939897\|ref\|ZP_03085279.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 s... gi\|238899599, gi... - gi\|238899599\|ref\|YP_002925395.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli BW2952],... gi\|254791333, gi... - gi\|254791333\|ref\|YP_003076170.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 ... gi\|191167019, gi... - gi\|75229814\|ref\|ZP_00716341.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|208740221, gi... - gi\|208820098\|ref\|ZP_03260418.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 s... gi\|157080008, gi... - gi\|75189298\|ref\|ZP_00702565.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|208734631, gi... - gi\|208813354\|ref\|ZP_03254683.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 s... gi\|217326522, gi... - gi\|217326522\|ref\|ZP_03442606.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 s... gi\|209398642, gi... - gi\|209398642\|ref\|YP_002268809.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O157:H7 ... gi\|74310821, gi\|... - gi\|74310821\|ref\|YP_309240.1\| D,D-heptose 1,7-bisphosphate phosphatase [Shigella sonnei Ss046], gi\|73... gi\|75238905, gi\|... - gi\|75238905\|ref\|ZP_00722887.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... GMHB_ECOLI - D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-) (D-glycero-D-manno-heptose 1,7-bisphosphate ph... GMHBB_ECO57 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Escherichia coli O157:H7 GN=gmhB PE...	3.0E-37	[1..188]	[1..188]
gi\|169756374, gi... - gi\|170021446\|ref\|YP_001726400.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli ATCC 873... gi\|218359549, gi... - gi\|218552781\|ref\|YP_002385694.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli IAI1], g... gi\|242376032, gi... - gi\|251783759\|ref\|YP_002998063.1\| hypothetical protein B21_00198 [Escherichia coli BL21], gi\|24237603... gi\|188495236, gi... - gi\|75512214\|ref\|ZP_00734786.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|218350398, gi... - gi\|218693666\|ref\|YP_002401333.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli 55989], ... gi\|192931204, gi... - gi\|75258806\|ref\|ZP_00730196.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|209917393, gi... - gi\|209917393\|ref\|YP_002291477.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli SE11], g... gi\|226840726, gi... - gi\|254037620\|ref\|ZP_04871697.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia sp. 1_1_43], g... gi\|157159667, gi... - gi\|75194412\|ref\|ZP_00704482.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|218355197, gi... - gi\|218547656\|ref\|YP_002381447.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia fergusonii AT... gi\|254287123, gi... - gi\|254287123\|ref\|YP_003052871.1\| hypothetical protein ECD_00199 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972221, gi... - gi\|254160320\|ref\|YP_003043428.1\| hypothetical protein ECB_00199 [Escherichia coli B str. REL606], gi...	4.0E-37	[1..188]	[1..188]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSVPAIFL DRDGTVNVDH GYVHEIDNFQ FIDGVIDACR ELKEMGFALV LVTNQSGIAR  60
   61 GMFTEEQFLS LTEWMDWSLA DRGVDLDGIY FCPHHPDGSV AEFSETCECR KPLPGMLLQA 120
  121 QNELNIDMAA SYMVGDKIED MQAALAANIG TKVLVRTGKP VTAEGEAAAD WVLNSLADLP 180
  181 KAIKARYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2gmwA
Description:	No description for 2gmwA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.92340854382984	bayes_pls_golite062009
imidazoleglycerol-phosphate dehydratase activity	0.35884565083558	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: