YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47169427
Organism:	Escherichia coli
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47169427.

Description	E-value	Query Range	Subject Range
gi\|2791329 - gi\|2791329\|emb\|CAA71433.1\| Colicin D-157 activity protein [Escherichia coli]	200.0	[0..1]	[107..591]
gi\|50952804 - gi\|50952804\|gb\|AAT90329.1\| klebicin D activity protein [Klebsiella oxytoca]	198.0	[0..1]	[107..610]
gi\|95111121 - gi\|95111121\|emb\|CAK15841.1\| conserved hypothetical protein; Rhs family protein [Pseudomonas entomoph... gi\|95111121, gi\|... - gi\|95111121\|emb\|CAK15841.1\| conserved hypothetical protein; Rhs family protein [Pseudomonas entomoph...	189.0	[0..2]	[107..1397]
gi\|77956060 - gi\|77956060\|ref\|ZP_00820222.1\| hypothetical protein YberA_01003649 [Yersinia bercovieri ATCC 43970]	161.0	[0..6]	[107..20]
gi\|20090892, gi\|... - gi\|20090892\|ref\|NP_616967.1\| hypothetical protein MA2045 [Methanosarcina acetivorans C2A], gi\|199159...	115.0	[0..5]	[86..2118]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNDPLDSGRF SRKQLDKKYK HAGDFGISDT KKNRETLTKF RDAIEEHLSD KDTVEKGTYR  60
   61 REKGSKVYFN PNTMNVVIIK SNGEFLSGWK INPDADNGRI YLETGEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1v74A
Description:	ribonuclease-inhibitor complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits