YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197291012, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197291012, gi....

Description	E-value	Query Range	Subject Range
ANMK_SALDC - Anhydro-N-acetylmuramic acid kinase OS=Salmonella dublin (strain CT_02021853) GN=anmK PE=3 SV=1 gi\|205327839, gi... - gi\|205327839\|gb\|EDZ14603.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=anmK] [protein=anhydro-N-acetylmuramic acid kinase] [protein_id=YP_005237316.1] [location=1531... ANMK_SALTY - Anhydro-N-acetylmuramic acid kinase OS=Salmonella typhimurium GN=anmK PE=3 SV=1 ANMK_SALTY - Anhydro-N-acetylmuramic acid kinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... ANMK_SALTY - Anhydro-N-acetylmuramic acid kinase OS=Salmonella typhimurium GN=anmK PE=3 SV=1	0.0	[1..373]	[1..373]
ANMK_SALPA - Anhydro-N-acetylmuramic acid kinase OS=Salmonella paratyphi A GN=anmK PE=3 SV=1 ANMK_SALPK - Anhydro-N-acetylmuramic acid kinase OS=Salmonella paratyphi A (strain AKU_12601) GN=anmK PE=3 SV=1 ANMK_SALPA - Anhydro-N-acetylmuramic acid kinase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=anmK PE...	0.0	[1..373]	[1..373]
ANMK_SHIF8 - Anhydro-N-acetylmuramic acid kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=anmK PE=3 SV=1	0.0	[1..368]	[1..368]
ANMK_PHOLL - Anhydro-N-acetylmuramic acid kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 /... ANMK_PHOLL - Anhydro-N-acetylmuramic acid kinase OS=Photorhabdus luminescens subsp. laumondii GN=anmK PE=3 SV=1	0.0	[1..367]	[3..369]
gi\|24113032, gi\|... - gi\|24113032\|ref\|NP_707542.1\| anhydro-N-acetylmuramic acid kinase [Shigella flexneri 2a str. 301], gi... gi\|30063157, gi\|... - gi\|30063157\|ref\|NP_837328.1\| anhydro-N-acetylmuramic acid kinase [Shigella flexneri 2a str. 2457T], ... ANMK_SHIFL - Anhydro-N-acetylmuramic acid kinase OS=Shigella flexneri GN=anmK PE=3 SV=1	0.0	[1..368]	[1..368]
gi\|22125855, gi\|... - gi\|22125855\|ref\|NP_669278.1\| hypothetical protein y1963 [Yersinia pestis KIM], gi\|21958787\|gb\|AAM855... gi\|45436813, gi\|... - gi\|45441950\|ref\|NP_993489.1\| hypothetical protein YP_2158 [Yersinia pestis biovar Microtus str. 9100... gi\|162354585, gi... - gi\|162421770\|ref\|YP_001606968.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis Angola], gi\|16...	0.0	[1..368]	[15..382]
gi\|165938545, gi... - gi\|89103785\|ref\|ZP_01176349.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|117673417, gi... - gi\|77629357\|ref\|ZP_00791943.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|166207663, gi... - gi\|166210483\|ref\|ZP_02236518.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|167400920, gi... - gi\|167400920\|ref\|ZP_02306426.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|165926440, gi... - gi\|165926440\|ref\|ZP_02222272.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|165990446, gi... - gi\|166010744\|ref\|ZP_02231642.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|166958979, gi... - gi\|167422167\|ref\|ZP_02313920.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|167425060, gi... - gi\|167425060\|ref\|ZP_02316813.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Mediaeva... gi\|77633731 - gi\|77633731\|ref\|ZP_00795850.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[1..368]	[8..375]
ANMK_PASMU - Anhydro-N-acetylmuramic acid kinase OS=Pasteurella multocida GN=anmK PE=3 SV=1 ANMK_PASMU - Anhydro-N-acetylmuramic acid kinase OS=Pasteurella multocida (strain Pm70) GN=anmK PE=3 SV=1	0.0	[1..366]	[1..370]
gi\|46913344, gi\|... - gi\|54308914\|ref\|YP_129934.1\| anhydro-N-acetylmuramic acid kinase [Photobacterium profundum SS9], gi\|...	0.0	[1..368]	[11..385]
ANMK_PHOPR - Anhydro-N-acetylmuramic acid kinase OS=Photobacterium profundum GN=anmK PE=3 SV=2 ANMK_PHOPR - Anhydro-N-acetylmuramic acid kinase OS=Photobacterium profundum (strain SS9) GN=anmK PE=3 SV=2	0.0	[1..368]	[1..375]

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Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGRFIGVM SGTSLDGVDV VLAAIDETMV AQQASLTWPI PVHLKKGILD ICQGQPLTLS  60
   61 QLGQLDTQLG RLFAQAVNAL LAQQRLQPRD IVAIGCHGQT VWHEPTGEAP HTLQIGDNNH 120
  121 IVAHTGITVV GDFRRRDIAL GGQGAPLVPA FHHALLGHPT EKRMVLNIGG IANLSLLFPG 180
  181 QAVRGYDTGP GNMLMDAWIW RQCAQPYDKD AAWAKEGQVI LPLLQKMLRD PYFAASAPKS 240
  241 TGREYFNYGW LERHLTAFPG ADARDVQATL AELTAVSIAQ QVLLNGGCER LMVCGGGSRN 300
  301 PLVMARLAAL LPGIEVSTTD KAGISGDDME ALAFAWLAWR TLAGLPGNLP SVTGATEASV 360
  361 LGAIYPANPI TQS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.48
Match:	1huxA
Description:	Hydroxyglutaryl-CoA dehydratase component A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits