YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167419870, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167419870, gi....

Description	E-value	Query Range	Subject Range
gi\|186699443, gi... - gi\|186896417\|ref\|YP_001873529.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51597312, gi\|... - gi\|51597312\|ref\|YP_071503.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q667J5\|Q667J5_YERPS - Phosphatidate cytidylyltransferase precursor - Yersinia pseudotuberculosis	3.0E-56	[1..282]	[1..282]
sp\|P0ABG1\|CDSA_ECOLI - Phosphatidate cytidylyltransferase OS=Escherichia coli (strain K12) GN=cdsA PE=1 SV=2 gi\|218703429, gi... - gi\|218703429\|ref\|YP_002410948.1\| CDP-diglyceride synthase [Escherichia coli UMN026], gi\|218430526\|em... EG10139 - CDP-diglyceride synthase / CDP-diglyceride synthase, integral membrane protein with eight transmembr... gi\|157065320, gi... - gi\|157159640\|ref\|YP_001456958.1\| CDP-diglyceride synthase [Escherichia coli HS], gi\|157065320\|gb\|ABV... gi\|157158930, gi... - gi\|157158930\|ref\|YP_001461344.1\| CDP-diglyceride synthase [Escherichia coli E24377A], gi\|157080960\|g... gi\|189371124, gi... - gi\|189371124\|gb\|EDU89540.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC869]... gi\|189000432, gi... - gi\|189000432\|gb\|EDU69418.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4076... gi\|168777012, gi... - gi\|187767700\|gb\|EDU31544.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4196... gi\|189360733, gi... - gi\|189360733\|gb\|EDU79152.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4486... gi\|189364912, gi... - gi\|189364912\|gb\|EDU83328.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4501... gi\|238860124, gi... - gi\|238899573\|ref\|YP_002925369.1\| CDP-diglyceride synthase [Escherichia coli BW2952], gi\|238860124\|gb... gi\|168755788, gi... - gi\|189357094\|gb\|EDU75513.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4401... gi\|188014560, gi... - gi\|188014560\|gb\|EDU52682.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4113... gi\|162139814 - gi\|162139814\|ref\|NP_308204.2\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. Sakai] CDSA_ECO57 - Phosphatidate cytidylyltransferase OS=Escherichia coli O157:H7 GN=cdsA PE=3 SV=2 gi\|161986588 - gi\|161986588\|ref\|YP_309214.2\| CDP-diglyceride synthase [Shigella sonnei Ss046] gi\|254791308, gi... - gi\|254791308\|ref\|YP_003076145.1\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. TW14359], g... gi\|161486544 - gi\|161486544\|ref\|NP_835903.2\| CDP-diglyceride synthase [Shigella flexneri 2a str. 2457T] gi\|253972195, gi... - gi\|254160294\|ref\|YP_003043402.1\| CDP-diglyceride synthase [Escherichia coli B str. REL606], gi\|25397... gi\|161367650 - gi\|161367650\|ref\|NP_285869.2\| CDP-diglyceride synthase [Escherichia coli O157:H7 EDL933] gi\|254037594, gi... - gi\|254037594\|ref\|ZP_04871671.1\| phosphatidate cytidylyltransferase [Escherichia sp. 1_1_43], gi\|2268... gi\|24050378, gi\|... - ref\|NP_706120.1\| phosphatidate cytidylyltransferase [Shigella flexneri 2a str. 301], gb\|AAN41827.1\|... gi\|253325842, gi... - gi\|254287097\|ref\|YP_003052845.1\| CDP-diglyceride synthase [Escherichia coli BL21(DE3)], gi\|253976404... gi\|218350372, gi... - gi\|218693640\|ref\|YP_002401307.1\| CDP-diglyceride synthase [Escherichia coli 55989], gi\|218350372\|emb... gi\|218552756, gi... - gi\|218552756\|ref\|YP_002385669.1\| CDP-diglyceride synthase [Escherichia coli IAI1], gi\|218359524\|emb\|... gi\|217324800, gi... - gi\|217324800\|ref\|ZP_03440884.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. TW... gi\|209910624, gi... - gi\|209917365\|ref\|YP_002291449.1\| CDP-diglyceride synthase [Escherichia coli SE11], gi\|209910624\|dbj\|... gi\|85674368, gi\|... - gi\|89107055\|ref\|AP_000835.1\| CDP-diglyceride synthase [Escherichia coli str. K-12 substr. W3110], gi... gi\|209399460, gi... - gi\|209399460\|ref\|YP_002268783.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. E... EG10139 - CDP-diglyceride synthase / CDP-diglyceride synthase, integral membrane protein with eight transmembr... gi\|208818382, gi... - gi\|208818382\|ref\|ZP_03258702.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... gi\|208733156, gi... - gi\|208811879\|ref\|ZP_03253208.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... CDSA_SHIFL - Phosphatidate cytidylyltransferase OS=Shigella flexneri GN=cdsA PE=3 SV=2 gi\|208806666, gi... - gi\|208806666\|ref\|ZP_03249003.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... gi\|195938143 - gi\|195938143\|ref\|ZP_03083525.1\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. EC4024] gi\|194439143, gi... - gi\|194439143\|ref\|ZP_03071225.1\| phosphatidate cytidylyltransferase [Escherichia coli 101-1], gi\|1944... gi\|194428293, gi... - gi\|194428293\|ref\|ZP_03060835.1\| phosphatidate cytidylyltransferase [Escherichia coli B171], gi\|19441... gi\|193067707, gi... - gi\|193067707\|ref\|ZP_03048674.1\| phosphatidate cytidylyltransferase [Escherichia coli E110019], gi\|19... gi\|193063179, gi... - gi\|193063179\|ref\|ZP_03044270.1\| phosphatidate cytidylyltransferase [Escherichia coli E22], gi\|192931... gi\|188488146, gi... - gi\|188492947\|ref\|ZP_03000217.1\| phosphatidate cytidylyltransferase [Escherichia coli 53638], gi\|1884... gi\|187429746, gi... - gi\|187732754\|ref\|YP_001878977.1\| phosphatidate cytidylyltransferase [Shigella boydii CDC 3083-94], g... gi\|169887646, gi... - gi\|170079811\|ref\|YP_001729131.1\| CDP-diglyceride synthase [Escherichia coli str. K-12 substr. DH10B]...	7.0E-53	[1..282]	[1..282]
gi\|117672744, gi... - gi\|77630031\|ref\|ZP_00792617.1\| COG0575: CDP-diglyceride synthetase [Yersinia pseudotuberculosis IP 3... gi\|89105140 - gi\|89105140\|ref\|ZP_01177665.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis biovar Orientali... gi\|77633944 - gi\|77633944\|ref\|ZP_00796056.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis Angola]	8.0E-53	[10..282]	[1..273]
gi\|110640394, gi... - gi\|110640394\|ref\|YP_668122.1\| CDP-diglyceride synthase [Escherichia coli 536], gi\|110341986\|gb\|ABG68... gi\|191172767, gi... - gi\|191172767\|ref\|ZP_03034304.1\| phosphatidate cytidylyltransferase [Escherichia coli F11], gi\|190906... gi\|91209245, gi\|... - gi\|91209245\|ref\|YP_539231.1\| CDP-diglyceride synthase [Escherichia coli UTI89], gi\|91070819\|gb\|ABE05... gi\|218363885, gi... - gi\|218557116\|ref\|YP_002390029.1\| CDP-diglyceride synthase [Escherichia coli S88], gi\|218363885\|emb\|C... gi\|237704334, gi... - gi\|237704334\|ref\|ZP_04534815.1\| phosphatidate cytidylyltransferase [Escherichia sp. 3_2_53FAA], gi\|2...	1.0E-52	[1..282]	[1..282]
gi\|26246121, gi\|... - gi\|26246121\|ref\|NP_752160.1\| CDP-diglyceride synthase [Escherichia coli CFT073], gi\|26106518\|gb\|AAN7... gi\|218425614, gi... - gi\|218688050\|ref\|YP_002396262.1\| CDP-diglyceride synthase [Escherichia coli ED1a], gi\|218425614\|emb\|... gi\|170520306, gi... - gi\|170682588\|ref\|YP_001742303.1\| phosphatidate cytidylyltransferase [Escherichia coli SMS-3-5], gi\|1... gi\|227884912, gi... - gi\|227884912\|ref\|ZP_04002717.1\| phosphatidate cytidylyltransferase [Escherichia coli 83972], gi\|2278...	1.0E-52	[1..282]	[1..282]
gi\|197361430, gi... - gi\|197361430\|ref\|YP_002141066.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|56126752, gi\|... - gi\|56412495\|ref\|YP_149570.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar P...	2.0E-52	[1..282]	[1..282]
lcl\|NC_016856.1_... - [gene=cdsA] [protein=CDP-diglyceride synthase] [protein_id=YP_005235894.1] [location=260831..261688] gi\|16759212 - gi\|16759212\|ref\|NP_454829.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar T... gi\|16418727, gi\|... - gi\|16763612\|ref\|NP_459227.1\| CDP-diglyceride synthase [Salmonella typhimurium LT2], gi\|16418727\|gb\|A... gi\|29140762, gi\|... - gi\|29140762\|ref\|NP_804104.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar T... gi\|25288702, gi\|... - gi\|25288702\|pir\|\|AH0529 phosphatidate cytidylyltransferase [imported] - Salmonella enterica subsp. e... gi\|205336211, gi... - gi\|205336211\|gb\|EDZ22975.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|197292064, gi... - gi\|197292064\|gb\|EDY31414.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205334954, gi... - gi\|205334954\|gb\|EDZ21718.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205331391, gi... - gi\|205331391\|gb\|EDZ18155.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|194401897, gi... - gi\|194443234\|ref\|YP_002039462.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|205340479, gi... - gi\|205340479\|gb\|EDZ27243.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|168464214, gi... - gi\|195632976\|gb\|EDX51430.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|168263910, gi... - gi\|205347506\|gb\|EDZ34137.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205322196, gi... - gi\|205322196\|gb\|EDZ10035.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|162139615 - gi\|162139615\|ref\|YP_215209.2\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar ... gi\|213609346 - gi\|213609346\|ref\|ZP_03369172.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213425948 - gi\|213425948\|ref\|ZP_03358698.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213163133 - gi\|213163133\|ref\|ZP_03348843.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|207855740, gi... - gi\|207855740\|ref\|YP_002242391.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|224582070, gi... - gi\|224582070\|ref\|YP_002635868.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|214000835 - gi\|214000835\|ref\|ZP_03411570.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213646662 - gi\|213646662\|ref\|ZP_03376715.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|197249050, gi... - gi\|197249050\|ref\|YP_002145227.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|194710240, gi... - gi\|194734738\|ref\|YP_002113245.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|194457046, gi... - gi\|194470682\|ref\|ZP_03076666.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter... gi\|194448982, gi... - gi\|194448982\|ref\|YP_002044212.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|205351559, gi... - gi\|205351559\|ref\|YP_002225360.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|204323390, gi... - gi\|204926725\|ref\|ZP_03217927.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter... gi\|198242689, gi... - gi\|198242689\|ref\|YP_002214183.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|197263977, gi... - gi\|197263977\|ref\|ZP_03164051.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter...	3.0E-52	[1..282]	[1..282]
gi\|85059915, gi\|... - gi\|85059915\|ref\|YP_455617.1\| CDP-diglyceride synthase [Sodalis glossinidius str. 'morsitans'], gi\|84...	4.0E-52	[1..282]	[1..282]
gi\|77972716, gi\|... - gi\|77972716\|ref\|ZP_00828275.1\| COG0575: CDP-diglyceride synthetase [Yersinia frederiksenii ATCC 3364...	2.0E-51	[10..282]	[1..273]
gi\|77977742 - gi\|77977742\|ref\|ZP_00833183.1\| COG0575: CDP-diglyceride synthetase [Yersinia intermedia ATCC 29909]	9.0E-51	[10..282]	[1..273]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLITAL ILIPVVIGAL FLLPPVGFAI VTLVVCMLAA WEWGQLAGFA SRTQRIWLAI  60
   61 LCGFLLVAML LSLPEYQHSP HHLLVSTPLW LSMGWWVAAL MLVLTYPRSA VSWRNSRLLR 120
  121 IIFGILTIIP FFWGMFALRQ YGYEQNHN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGAWWLLYVM LLVWGADSGA YMFGKLFGKH KLAPKVSPGK TWEGLIGGLL TSALISLLFG  60
   61 RYAPLDIVPE KLLICSVVAA LASVLGDLTE SMFKREAGIK DSGHLIPGHG GILDRIDSLT 120
  121 AAVPVFACLM LLVF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.2.2	Ribosomal protein L29 (L29p)
View	Download	0.725	N/A	N/A	a.2.2	Ribosomal protein L29 (L29p)
View	Download	0.722	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.649	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.604	N/A	N/A	a.156.1	S13-like H2TH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits