YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052696
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052696.

Description	E-value	Query Range	Subject Range
gi\|153948 - gi\|153948\|gb\|AAA02815.1\| dnaA protein gi\|153948\|gb\|AAA... - dnaA protein	4.0E-77	[1..466]	[1..466]
DNAA_SALPA - Chromosomal replication initiator protein DnaA OS=Salmonella paratyphi A GN=dnaA PE=3 SV=1 DNAA_SALPA - Chromosomal replication initiator protein DnaA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)... gi\|238913091 - gi\|238913091\|ref\|ZP_04656928.1\| chromosomal replication initiation protein [Salmonella enterica subs... gi\|204928789, gi... - gi\|204928789\|ref\|ZP_03219988.1\| chromosomal replication initiator protein DnaA [Salmonella enterica ... DNAA_SALPB - Chromosomal replication initiator protein dnaA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB... DNAA_SALSV - Chromosomal replication initiator protein DnaA OS=Salmonella schwarzengrund (strain CVM19633) GN=dna... DNAA_SALTY - Chromosomal replication initiator protein dnaA OS=Salmonella typhimurium GN=dnaA PE=3 SV=2 DNAA_SALA4 - Chromosomal replication initiator protein DnaA OS=Salmonella agona (strain SL483) GN=dnaA PE=3 SV=1 DNAA_SALPK - Chromosomal replication initiator protein DnaA OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaA ... DNAA_SALTY - Chromosomal replication initiator protein DnaA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... gi\|200388152, gi... - gi\|200388152\|ref\|ZP_03214764.1\| chromosomal replication initiator protein DnaA [Salmonella enterica ... DNAA_SALPB - Chromosomal replication initiator protein DnaA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB... gi\|168818302, gi... - gi\|205344670\|gb\|EDZ31434.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs... DNAA_SALNS - Chromosomal replication initiator protein DnaA OS=Salmonella newport (strain SL254) GN=dnaA PE=3 SV=... DNAA_SALHS - Chromosomal replication initiator protein DnaA OS=Salmonella heidelberg (strain SL476) GN=dnaA PE=3 ... gi\|194470761, gi... - gi\|194470761\|ref\|ZP_03076745.1\| chromosomal replication initiator protein DnaA [Salmonella enterica ... lcl\|NC_016856.1_... - [gene=dnaA] [protein=chromosomal replication initiation protein] [protein_id=YP_005240105.1] [locati... gi\|205332569, gi... - gi\|205332569\|gb\|EDZ19333.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs... DNAA_SALTY - Chromosomal replication initiator protein DnaA OS=Salmonella typhimurium GN=dnaA PE=3 SV=2 gi\|168235478, gi... - gi\|197291232\|gb\|EDY30584.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs... gi\|168260377, gi... - gi\|205350503\|gb\|EDZ37134.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs... gi\|168464831, gi... - gi\|195632396\|gb\|EDX50880.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs... gi\|167548872, gi... - gi\|205325509\|gb\|EDZ13348.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs... gi\|167992432, gi... - gi\|205329368\|gb\|EDZ16132.1\| chromosomal replication initiator protein DnaA [Salmonella enterica subs...	5.0E-77	[1..466]	[1..466]
DNAA_SALCH - Chromosomal replication initiator protein dnaA OS=Salmonella choleraesuis GN=dnaA PE=3 SV=1 DNAA_SALCH - Chromosomal replication initiator protein DnaA OS=Salmonella choleraesuis GN=dnaA PE=3 SV=1 DNAA_SALCH - Chromosomal replication initiator protein DnaA OS=Salmonella choleraesuis (strain SC-B67) GN=dnaA PE...	6.0E-77	[1..466]	[1..466]
DNAA_SHIDS - Chromosomal replication initiator protein DnaA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=...	2.0E-75	[1..466]	[1..467]
DNAA_ECOUT - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaA PE=... gi\|192957474, gi... - gi\|193069150\|ref\|ZP_03050107.1\| chromosomal replication initiator protein DnaA [Escherichia coli E11... gi\|192930514, gi... - gi\|193063799\|ref\|ZP_03044886.1\| chromosomal replication initiator protein DnaA [Escherichia coli E22... gi\|190909255, gi... - gi\|191170447\|ref\|ZP_03032000.1\| chromosomal replication initiator protein DnaA [Escherichia coli F11... gi\|190904098, gi... - gi\|191165774\|ref\|ZP_03027612.1\| chromosomal replication initiator protein DnaA [Escherichia coli B7A... sp\|B7UMG9\|DNAA_ECO27 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) ... DNAA_ECOSE - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain SE11) GN=dnaA PE=3 SV=1 gi\|194425233, gi... - gi\|194435690\|ref\|ZP_03067793.1\| chromosomal replication initiator protein DnaA [Escherichia coli 101... gi\|194420758, gi... - gi\|194431303\|ref\|ZP_03063596.1\| chromosomal replication initiator protein DnaA [Shigella dysenteriae... gi\|194413812, gi... - gi\|194428054\|ref\|ZP_03060598.1\| chromosomal replication initiator protein DnaA [Escherichia coli B17... gi\|188495189, gi... - gi\|188495189\|ref\|ZP_03002459.1\| chromosomal replication initiator protein DnaA [Escherichia coli 536... DNAA_ECOSM - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dnaA ... DNAA_ECOLI - Chromosomal replication initiator protein dnaA - Escherichia coli DNAA_SHISS - Chromosomal replication initiator protein DnaA OS=Shigella sonnei (strain Ss046) GN=dnaA PE=3 SV=1 gi\|85676342, gi\|... - gi\|89110311\|ref\|AP_004091.1\| chromosomal replication initiator protein DnaA, DNA-binding transcripti... DNAA_ECOHS - Chromosomal replication initiator protein DnaA OS=Escherichia coli O9:H4 (strain HS) GN=dnaA PE=3 SV... EG10235 - chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator / DNA syn... DNAA_ECO24 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) ... EG10235 - chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator / DNA syn... DNAA_ECO81 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O81 (strain ED1a) GN=dnaA PE=3 SV... DNAA_ECO45 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dn... DNAA_ECO8A - Chromosomal replication initiator protein DnaA OS=Escherichia coli O8 (strain IAI1) GN=dnaA PE=3 SV=... DNAA_ECO27 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) ... DNAA_ECOLU - Chromosomal replication initiator protein DnaA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPE... DNAA_ECO7I - Chromosomal replication initiator protein DnaA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=d... DNAA_ECO55 - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain 55989 / EAEC) GN=dnaA PE=... DNAA_ECOBW - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN... gi\|237703502, gi... - gi\|237703502\|ref\|ZP_04533983.1\| chromosomal replication initiation protein [Escherichia sp. 3_2_53FA... gi\|254290403, gi... - gi\|254290403\|ref\|YP_003056151.1\| chromosomal replication initiation protein [Escherichia coli BL21(D... gi\|242379241, gi... - gi\|251786968\|ref\|YP_003001272.1\| hypothetical protein B21_03529 [Escherichia coli BL21], gi\|24237924... gi\|253975554, gi... - gi\|254163653\|ref\|YP_003046761.1\| chromosomal replication initiation protein [Escherichia coli B str.... gi\|254038919, gi... - gi\|254038919\|ref\|ZP_04872971.1\| chromosomal replication initiation protein [Escherichia sp. 1_1_43],...	2.0E-75	[1..466]	[1..467]
gi\|30043271, gi\|... - gi\|30065010\|ref\|NP_839181.1\| chromosomal replication initiation protein [Shigella flexneri 2a str. 2...	3.0E-75	[1..466]	[1..467]
gi\|15833891, gi\|... - gi\|15833891\|ref\|NP_312664.1\| chromosomal replication initiation protein [Escherichia coli O157:H7 st... gi\|208819691, gi... - gi\|208819691\|ref\|ZP_03260011.1\| chromosomal replication initiator protein DnaA [Escherichia coli O15... DNAA_ECO5E - Chromosomal replication initiator protein DnaA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN... gi\|217325750, gi... - gi\|217325750\|ref\|ZP_03441834.1\| chromosomal replication initiator protein DnaA [Escherichia coli O15... gi\|25299840, gi\|... - pir\|\|G86054 replication initiation protein DnaA [similarity] - Escherichia coli (strain O157:H7, sub... gi\|168798737, gi... - gi\|189378776\|gb\|EDU97192.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|195936323 - gi\|195936323\|ref\|ZP_03081705.1\| chromosomal replication initiation protein [Escherichia coli O157:H7... gi\|208727477, gi... - gi\|208807676\|ref\|ZP_03250013.1\| chromosomal replication initiator protein DnaA [Escherichia coli O15... gi\|12518541, gi\|... - gi\|15804296\|ref\|NP_290335.1\| chromosomal replication initiation protein [Escherichia coli O157:H7 ED... gi\|208811867, gi... - gi\|208811867\|ref\|ZP_03253196.1\| chromosomal replication initiator protein DnaA [Escherichia coli O15... gi\|168759888, gi... - gi\|189369914\|gb\|EDU88330.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|187771794, gi... - gi\|187771794\|gb\|EDU35638.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|168779924, gi... - gi\|189002469\|gb\|EDU71455.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|168786532, gi... - gi\|189373439\|gb\|EDU91855.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|188016856, gi... - gi\|188016856\|gb\|EDU54978.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|168753591, gi... - gi\|189358966\|gb\|EDU77385.1\| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7... gi\|254795705, gi... - gi\|254795705\|ref\|YP_003080542.1\| chromosomal replication initiator protein DnaA, DNA-binding transcr... DNAA_ECO57 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O157:H7 GN=dnaA PE=3 SV=1	5.0E-75	[1..466]	[1..467]
DNAA_SHIBS - Chromosomal replication initiator protein DnaA OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaA ...	6.0E-75	[1..466]	[1..467]
tr\|A0A0G3HXH2\|A0... - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain K12) GN=dnaA PE=3 SV=2 gi\|227883923, gi... - gi\|227883923\|ref\|ZP_04001728.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... gi\|115515102, gi... - gi\|117625978\|ref\|YP_859301.1\| chromosomal replication initiation protein [Escherichia coli APEC O1],...	3.0E-74	[1..466]	[5..471]
gi\|167401560, gi... - gi\|167401560\|ref\|ZP_02307054.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|166958243, gi... - gi\|167422851\|ref\|ZP_02314604.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|167055492, gi... - gi\|167425478\|ref\|ZP_02317231.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|45438598, gi\|... - gi\|45443728\|ref\|NP_995267.1\| chromosomal replication initiation protein [Yersinia pestis biovar Micr... DNAA_YERPG - Chromosomal replication initiator protein DnaA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dna... gi\|165926099, gi... - gi\|165926099\|ref\|ZP_02221931.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|218931074, gi... - gi\|218931074\|ref\|YP_002348949.1\| chromosomal replication initiation protein [Yersinia pestis CO92], ... gi\|166009506, gi... - gi\|166009506\|ref\|ZP_02230404.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... DNAA_YERPS - Chromosomal replication initiator protein DnaA OS=Yersinia pseudotuberculosis serotype I (strain IP3... gi\|166205585, gi... - gi\|166213287\|ref\|ZP_02239322.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... DNAA_YERP3 - Chromosomal replication initiator protein DnaA OS=Yersinia pseudotuberculosis serotype O:1b (strain ... gi\|149290376, gi... - gi\|150260968\|ref\|ZP_01917696.1\| chromosomal replication initiator protein [Yersinia pestis CA88-4125... DNAA_YERPP - Chromosomal replication initiator protein DnaA OS=Yersinia pestis (strain Pestoides F) GN=dnaA PE=3 ... gi\|229696170, gi... - gi\|229839804\|ref\|ZP_04459963.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... DNAA_YERPE - Chromosomal replication initiator protein DnaA OS=Yersinia pestis GN=dnaA PE=3 SV=1 gi\|229841889, gi... - gi\|229841889\|ref\|ZP_04462045.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... DNAA_YERPA - Chromosomal replication initiator protein DnaA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dn... DNAA_YERPN - Chromosomal replication initiator protein DnaA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=d... gi\|229896766, gi... - gi\|229896766\|ref\|ZP_04511929.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... DNAA_YERPS - Chromosomal replication initiator protein DnaA OS=Yersinia pseudotuberculosis GN=dnaA PE=3 SV=1	6.0E-74	[1..466]	[1..462]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSLWQQCL ARLQDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN  60
   61 GLLNTFCGAD APQLRFEVGT KPVTQTLKTP VHNVVAPTQT TTAQPQRVAP AARSGWDNVP 120
  121 APAEPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.09691
Match:	2e0gA
Description:	No description for 2e0gA was found.

Predicted Domain #2

Region A:
Residues: [127-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YRSNVNVKHT FDNFVEGKSN QLARAAARQV ADNPGGAYNP LFLYGGTGLG KTHLLHAVGN  60
   61 GIMARKPNAK VVYMHSERFV QDMVKALQNN AIEEFKRYYR SVDALLIDDI QFFANKERSQ 120
  121 EEFFHTFNAL LEGNQQIILT SDRYPKEING VEDRLKSRFG WGLTVAIEPP ELETRVAILM 180
  181 KKADENDIRL PGEVAFFIAK RLRSNVRELE GALNRVIANA NFTGRAITID FVREALRDLL 240
  241 ALQEKLVTID NIQKTVAEYY KIKIADLLSK RRSRSVARPR QMAMALAKEL TNHSLPEIGD 300
  301 AFGGRDHTTV LHACRKIEQL REESHDIKED FSNLIRTLSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	2hcbA
Description:	No description for 2hcbA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
binding	1.30574971150356	bayes_pls_golite062009
pyrophosphatase activity	1.16998111465319	bayes_pls_golite062009
nucleic acid binding	0.595576734443569	bayes_pls_golite062009
DNA binding	0.278289439071945	bayes_pls_golite062009
transcription regulator activity	0.272450877010668	bayes_pls_golite062009
helicase activity	0.00674361801283974	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: