YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204930204, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204930204, gi....

Description	E-value	Query Range	Subject Range
gi\|62130171, gi\|... - gi\|62182538\|ref\|YP_218955.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica subsp.... gi\|198242713, gi... - gi\|198242713\|ref\|YP_002218004.1\| LsrG protein [Salmonella enterica subsp. enterica serovar Dublin st...	1.0E-25	[1..109]	[1..109]
gi\|16422645 - gi\|16422645\|gb\|AAL22919.1\| putative inner membrane protein [Salmonella enterica subsp. enterica sero... gi\|205360630, gi... - gi\|205360630\|ref\|ZP_02684990.2\| LsrG protein [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|205357716, gi... - gi\|205357716\|ref\|ZP_02572752.2\| LsrG protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|197265125, gi... - gi\|197265125\|ref\|ZP_03165199.1\| LsrG protein [Salmonella enterica subsp. enterica serovar Saintpaul ...	6.0E-25	[1..109]	[1..109]
gi\|25502754 - pir\|\|D95916 hypothetical protein SMb21023 [imported] - Sinorhizobium meliloti (strain 1021) magaplas... gi\|15140481, gi\|... - gi\|16264344\|ref\|NP_437136.1\| hypothetical protein SM_b21023 [Sinorhizobium meliloti 1021], gi\|151404...	2.0E-20	[14..108]	[1..95]
gi\|7470153 - pir\|\|S77088 hypothetical protein sll1783 - Synechocystis sp. (strain PCC 6803) Y1783_SYNY3 - Uncharacterized protein sll1783 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1783 PE=3 SV=1 YH83_SYNY3, Y178... - (P73602) Hypothetical protein sll1783, Uncharacterized protein sll1783 OS=Synechocystis sp. (strain ...	7.0E-20	[11..104]	[46..139]
gi\|77977992, gi\|... - gi\|77977992\|ref\|ZP_00833428.1\| COG1359: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	8.0E-20	[13..109]	[15..111]
gi\|15603144, gi\|... - gi\|15603144\|ref\|NP_246216.1\| autoinducer-2 (AI-2) modifying protein LsrG [Pasteurella multocida subs...	1.0E-19	[14..109]	[1..96]
gi\|192286296, gi... - gi\|192292547\|ref\|YP_001993152.1\| Antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris T... RPA3659 - RPA3659 DUF176 4132804:4133103 reverse MW:10962	1.0E-19	[14..106]	[1..93]
gi\|55247162, gi\|... - gi\|57965636\|ref\|XP_561258.1\| ENSANGP00000026009 [Anopheles gambiae str. PEST], gi\|55247162\|gb\|EAL423...	2.0E-19	[13..107]	[3..96]
gi\|37678340, gi\|... - gi\|37678340\|ref\|NP_932949.1\| hypothetical protein VV0156 [Vibrio vulnificus YJ016], gi\|37197079\|dbj\|...	2.0E-19	[14..107]	[1..94]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVILFGIIR GLMMHVTLVE INVHDDKVEQ FIDVFRQNHL GSIKEPGNLR FDVLQDPQVP  60
   61 TRFYIYEAYV DEQAVAFHKT TPHYKTCVEQ LEPLMTGPRT KKVFMGLMP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	2gffA
Description:	No description for 2gffA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits