YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213650073
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213650073.

Description	E-value	Query Range	Subject Range
gi\|62128933, gi\|... - gi\|62181300\|ref\|YP_217717.1\| hypothetical protein SC2730 [Salmonella enterica subsp. enterica serova... gi\|16421346, gi\|... - gi\|16766109\|ref\|NP_461724.1\| putative rhodanese-like sulfurtransferase [Salmonella typhimurium LT2],... gi\|199605812, gi... - gi\|200388714\|ref\|ZP_03215326.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica ser... gi\|224584580, gi... - gi\|224584580\|ref\|YP_002638378.1\| hypothetical protein SPC_2841 [Salmonella enterica subsp. enterica ... gi\|194451322, gi... - gi\|194451322\|ref\|YP_002046758.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica se... gi\|197242140, gi... - gi\|197263885\|ref\|ZP_03163959.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica ser... gi\|168244592, gi... - gi\|205336568\|gb\|EDZ23332.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica serovar... gi\|195633381, gi... - gi\|195633381\|gb\|EDX51795.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=ygaP] [protein=putative rhodanese-like sulfurtransferase] [protein_id=YP_005238890.1] [locatio... gi\|205322701, gi... - gi\|205322701\|gb\|EDZ10540.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica serovar... gi\|205329347, gi... - gi\|205329347\|gb\|EDZ16111.1\| inner membrane protein YgaP [Salmonella enterica subsp. enterica serovar...	7.0E-39	[1..175]	[1..175]
gi\|17231397, gi\|... - gi\|17231397\|ref\|NP_487945.1\| hypothetical protein alr3905 [Nostoc sp. PCC 7120], gi\|17133039\|dbj\|BAB... gi\|25322706 - pir\|\|AB2294 hypothetical protein alr3905 [imported] - Nostoc sp. (strain PCC 7120)	6.0E-38	[2..173]	[6..175]
gi\|56414756, gi\|... - gi\|56414756\|ref\|YP_151831.1\| hypothetical protein SPA2655 [Salmonella enterica subsp. enterica serov... gi\|197363684, gi... - gi\|197363684\|ref\|YP_002143321.1\| hypothetical protein SSPA2476 [Salmonella enterica subsp. enterica ...	8.0E-38	[1..175]	[1..175]
gi\|53764140, gi\|... - gi\|75908013\|ref\|YP_322309.1\| rhodanese-like protein [Anabaena variabilis ATCC 29413], gi\|75701738\|gb...	3.0E-36	[2..173]	[6..175]
gi\|86606377, gi\|... - gi\|86606377\|ref\|YP_475140.1\| rhodanese domain-containing protein [Synechococcus sp. JA-3-3Ab], gi\|86... gi\|86606377 - gi\|86606377\|ref\|YP_475140.1\| rhodanese domain protein [Cyanobacteria bacterium Yellowstone A-Prime]	4.0E-36	[3..172]	[20..189]
YGAP_ECOLI - Inner membrane protein ygaP - Escherichia coli gi\|85675515, gi\|... - gi\|89109461\|ref\|AP_003241.1\| predicted inner membrane protein with hydrolase activity [Escherichia c... EG13288 - DUF2892 family inner membrane rhodanese / DUF2892 family inner membrane rhodanese; tributyltin-induc... gi\|170019080, gi... - gi\|170019080\|ref\|YP_001724034.1\| rhodanese domain-containing protein [Escherichia coli ATCC 8739], g... gi\|254037710, gi... - gi\|254037710\|ref\|ZP_04871768.1\| rhodanese domain-containing protein [Escherichia sp. 1_1_43], gi\|226... gi\|238901812, gi... - gi\|238901812\|ref\|YP_002927608.1\| putative inner membrane protein with hydrolase activity [Escherichi... gi\|124500932, gi... - gi\|124528040\|ref\|ZP_01699393.1\| Rhodanese domain protein [Escherichia coli B], gi\|124500932\|gb\|EAY48... EG13288 - DUF2892 family inner membrane rhodanese / DUF2892 family inner membrane rhodanese; tributyltin-induc... gi\|170082255, gi... - gi\|170082255\|ref\|YP_001731575.1\| inner membrane protein with hydrolase activity [Escherichia coli st...	3.0E-35	[1..174]	[1..174]
gi\|187479151, gi... - gi\|187479151\|ref\|YP_787176.1\| detoxifying sulphurtransferase [Bordetella avium 197N], gi\|115423738\|e...	3.0E-35	[1..172]	[1..170]
gi\|86609381, gi\|... - gi\|86609381\|ref\|YP_478143.1\| rhodanese family protein [Cyanobacteria bacterium Yellowstone B-Prime],... gi\|86609381, gi\|... - gi\|86609381\|ref\|YP_478143.1\| rhodanese family protein [Synechococcus sp. JA-2-3B'a(2-13)], gi\|865579...	3.0E-35	[3..172]	[20..189]
gi\|188487631, gi... - gi\|75513237\|ref\|ZP_00735679.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli 53638]... gi\|157162118, gi... - gi\|75196649\|ref\|ZP_00706719.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli HS], g... gi\|253978673, gi... - gi\|254289366\|ref\|YP_003055114.1\| predicted inner membrane protein with hydrolase activity [Escherich... gi\|194439466, gi... - gi\|83585165\|ref\|ZP_00923816.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli 101-1]... gi\|251785957, gi... - gi\|251785957\|ref\|YP_003000261.1\| hypothetical protein B21_02488 [Escherichia coli BL21], gi\|24237823... gi\|254162605, gi... - gi\|254162605\|ref\|YP_003045713.1\| predicted inner membrane protein with hydrolase activity [Escherich...	4.0E-35	[1..174]	[1..174]
gi\|218352997, gi... - gi\|218696265\|ref\|YP_002403932.1\| conserved hypothetical protein; putative inner membrane protein wit... gi\|193065978, gi... - gi\|75255969\|ref\|ZP_00727693.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli E22], ... gi\|75234115, gi\|... - gi\|75234115\|ref\|ZP_00718526.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli E11001... gi\|194427843, gi... - gi\|75210873\|ref\|ZP_00710997.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli B171],... gi\|157158455, gi... - gi\|75187393\|ref\|ZP_00700660.1\| COG0607: Rhodanese-related sulfurtransferase [Escherichia coli E24377...	4.0E-35	[1..174]	[1..174]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGIVSPRE AQALIAQGAK LIDVRDADEY LREHIPHAQL APLSRLEQGD LPANLRAEQI  60
   61 IFHCQSGKRT SSNAAKLQAI AAPAQVSLLE GGIDGWKAAG LPVTEDKSQP LPLMRQVQIA 120
  121 AGGLTLLGVI LGYTVHGGFF LISGFVGAGL MLAGITGFCG MARLLEKMPW NTRTH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.157249563453524	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: