YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189369139, gi...
Organism:	Escherichia coli O157:H7 str. EC4501
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189369139, gi....

Description	E-value	Query Range	Subject Range
gi\|17430370 - gi\|17430370\|emb\|CAD17135.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17548064 - gi\|17548064\|ref\|NP_521466.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	150.0	[0..2]	[130..16]
gi\|76882052, gi\|... - gi\|77163738\|ref\|YP_342263.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani ATCC 1... gi\|207088264 - gi\|207088264\|gb\|EDZ65536.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani AFC27] gi\|224408610, gi... - gi\|254435153\|ref\|ZP_05048660.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani AFC...	147.0	[0..1]	[128..2]
HMRR2_RHIME, HMR... - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti GN=hmrR2 PE=3 SV=1, (P58379) H... HMRR2_RHIME - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti (strain 1021) GN=hmrR2 PE=3 SV...	147.0	[0..1]	[132..1]
HMRR_SINMW - HTH-type transcriptional regulator HmrR OS=Sinorhizobium medicae (strain WSM419) GN=hmrR PE=1 SV=1 HMRR_RHIME - HTH-type transcriptional regulator hmrR - Rhizobium meliloti (Sinorhizobium meliloti)	146.0	[0..1]	[130..1]
CUER_ECOL6 - HTH-type transcriptional regulator CueR OS=Escherichia coli O6 GN=cueR PE=3 SV=1 gi\|227838585, gi... - gi\|227884499\|ref\|ZP_04002304.1\| DNA-binding transcriptional regulator CueR [Escherichia coli 83972],... CUER_ECOL6 - HTH-type transcriptional regulator CueR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... gi\|190906025, gi... - gi\|75238241\|ref\|ZP_00722242.1\| COG0789: Predicted transcriptional regulators [Escherichia coli F11],... gi\|110640752, gi... - gi\|110640752\|ref\|YP_668480.1\| DNA-binding transcriptional regulator CueR [Escherichia coli 536], gi\|... gi\|215485567, gi... - gi\|215485567\|ref\|YP_002327998.1\| DNA-binding transcriptional regulator CueR [Escherichia coli O127:H... gi\|218425916, gi... - gi\|218688352\|ref\|YP_002396564.1\| DNA-binding transcriptional regulator CueR [Escherichia coli ED1a],...	146.0	[0..1]	[135..1]
gi\|81239916, gi\|... - gi\|82775768\|ref\|YP_402115.1\| DNA-binding transcriptional regulator CueR [Shigella dysenteriae Sd197]...	146.0	[0..1]	[135..1]
gi\|193067606, gi... - gi\|75239017\|ref\|ZP_00722999.1\| COG0789: Predicted transcriptional regulators [Escherichia coli E1100... gi\|253325567, gi... - gi\|254287360\|ref\|YP_003053108.1\| DNA-binding transcriptional activator of copper-responsive regulon ... gi\|218359821, gi... - gi\|218553053\|ref\|YP_002385966.1\| DNA-binding transcriptional regulator CueR [Escherichia coli IAI1],... gi\|193064160, gi... - gi\|75257868\|ref\|ZP_00729346.1\| COG0789: Predicted transcriptional regulators [Escherichia coli E22],... gi\|251783995, gi... - gi\|251783995\|ref\|YP_002998299.1\| hypothetical protein B21_00443 [Escherichia coli BL21], gi\|24237626... gi\|218693949, gi... - gi\|218693949\|ref\|YP_002401616.1\| DNA-binding transcriptional regulator CueR [Escherichia coli 55989]... gi\|75209757, gi\|... - gi\|75209757\|ref\|ZP_00709959.1\| COG0789: Predicted transcriptional regulators [Escherichia coli B171]... gi\|238899774, gi... - gi\|238899774\|ref\|YP_002925570.1\| DNA-binding transcriptional activator of copper-responsive regulon ... gi\|190902440, gi... - gi\|75229352\|ref\|ZP_00715907.1\| COG0789: Predicted transcriptional regulators [Escherichia coli B7A],... gi\|82542981, gi\|... - gi\|82542981\|ref\|YP_406928.1\| DNA-binding transcriptional regulator CueR [Shigella boydii Sb227], gi\|... gi\|85674626, gi\|... - gi\|89107356\|ref\|AP_001136.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 subst... gi\|188487426, gi... - gi\|75514610\|ref\|ZP_00736865.1\| COG0789: Predicted transcriptional regulators [Escherichia coli 53638... gi\|74311068, gi\|... - gi\|74311068\|ref\|YP_309487.1\| DNA-binding transcriptional regulator CueR [Shigella sonnei Ss046], gi\|... gi\|157157213, gi... - gi\|75189555\|ref\|ZP_00702822.1\| COG0789: Predicted transcriptional regulators [Escherichia coli E2437... gi\|169756053, gi... - gi\|170021125\|ref\|YP_001726079.1\| DNA-binding transcriptional regulator CueR [Escherichia coli ATCC 8... gi\|169887907, gi... - gi\|170080072\|ref\|YP_001729392.1\| DNA-binding transcriptional activator of copper-responsive regulon ... gi\|75194707, gi\|... - gi\|75194707\|ref\|ZP_00704777.1\| COG0789: Predicted transcriptional regulators [Escherichia coli HS], ... gi\|209910962, gi... - gi\|209917703\|ref\|YP_002291787.1\| DNA-binding transcriptional regulator CueR [Escherichia coli SE11],... gi\|187428710, gi... - gi\|75177566\|ref\|ZP_00697647.1\| COG0789: Predicted transcriptional regulators [Shigella boydii BS512]... gi\|218355483, gi... - gi\|218547942\|ref\|YP_002381733.1\| DNA-binding transcriptional regulator CueR [Escherichia fergusonii ... gi\|124530261, gi... - gi\|124530261\|ref\|ZP_01700980.1\| transcriptional regulator, MerR family [Escherichia coli B], gi\|1244... CUER_ECOLI - HTH-type transcriptional regulator cueR (Copper efflux regulator) (Copper export regulator) - Escher... gi\|194419061, gi... - gi\|83570179\|ref\|ZP_00921625.1\| COG0789: Predicted transcriptional regulators [Shigella dysenteriae 1... gi\|194437386, gi... - gi\|83587058\|ref\|ZP_00925688.1\| COG0789: Predicted transcriptional regulators [Escherichia coli 101-1... gi\|24111870, gi\|... - gi\|24111870\|ref\|NP_706380.1\| DNA-binding transcriptional regulator CueR [Shigella flexneri 2a str. 3... gi\|30040231, gi\|... - gi\|30061987\|ref\|NP_836158.1\| DNA-binding transcriptional regulator CueR [Shigella flexneri 2a str. 2... CUER_SHIFL - HTH-type transcriptional regulator CueR OS=Shigella flexneri GN=cueR PE=3 SV=1 EG13256 - copper-responsive regulon transcriptional regulator / Activator of copper-responsive regulon genes c... EG13256 - copper-responsive regulon transcriptional regulator / Activator of copper-responsive regulon genes c... gi\|254160556, gi... - gi\|254160556\|ref\|YP_003043664.1\| DNA-binding transcriptional activator protein [Escherichia coli B s...	146.0	[0..1]	[135..1]
gi\|49076946 - gi\|49076946\|gb\|AAT49618.1\| PA4778 [synthetic construct]	145.0	[0..1]	[133..1]
gi\|15888277, gi\|... - gi\|17934846\|ref\|NP_531636.1\| transcriptional regulator, MerR family [Agrobacterium tumefaciens str. ... gi\|25302889, gi\|... - pir\|\|AB2692 transcription regulator, MerR family cueR [imported] - Agrobacterium tumefaciens (strain...	145.0	[0..1]	[133..1]
gi\|126223005, gi... - gi\|126443514\|ref\|YP_001061596.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomall... gi\|157806622, gi... - gi\|254296837\|ref\|ZP_04964291.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|169657072, gi... - gi\|254198900\|ref\|ZP_04905318.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|254185283, gi... - gi\|254185283\|ref\|ZP_04891871.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167921652 - gi\|167921652\|ref\|ZP_02508743.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167913710 - gi\|167913710\|ref\|ZP_02500801.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167905418 - gi\|167905418\|ref\|ZP_02492623.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|76819060, gi\|... - gi\|76819060\|ref\|YP_337065.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomallei 1... gi\|167897034 - gi\|167897034\|ref\|ZP_02484436.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167848482 - gi\|167848482\|ref\|ZP_02473990.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167826967 - gi\|167826967\|ref\|ZP_02458438.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167722425 - gi\|167722425\|ref\|ZP_02405661.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|254213664, gi... - gi\|254262662\|ref\|ZP_04953527.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|161358674 - gi\|161358674\|ref\|ZP_02104546.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle...	145.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISDVAKIT GLTSKAIRFY EEKGLVTPPM RSENGYRTYT QQHLNELTLL RQARQVGFNL  60
   61 EESGELVNLF NDPQRHSADV KRRTLEKVAE IERHIEELQS MRNQLLALAN ACPGDDSADC 120
  121 PIIENLSGCC HHRAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits