YRC Public Data Repository - Protein Structure Prediction

Protein:	SYDP_SALHS
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYDP_SALHS.

Description	E-value	Query Range	Subject Range
SYDP_ECOK1 - Protein Syd OS=Escherichia coli O1:K1 / APEC GN=syd PE=3 SV=2 SYDP_ECOUT - Protein Syd OS=Escherichia coli (strain UTI89 / UPEC) GN=syd PE=3 SV=1 gi\|124528758, gi... - gi\|124528758\|ref\|ZP_01699982.1\| Syd family protein [Escherichia coli B], gi\|124500286\|gb\|EAY47761.1\|... gi\|85675612, gi\|... - gi\|89109579\|ref\|AP_003359.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... SYDP_SHIBS - Protein Syd OS=Shigella boydii serotype 4 (strain Sb227) GN=syd PE=3 SV=1 SYDP_ECOL5 - Protein Syd OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=syd PE=3 SV=1 SYDP_ECOLI - Protein syd - Escherichia coli SYDP_ECOL6 - Protein Syd OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=syd PE=3 SV=1 gi\|193071114, gi... - gi\|75233981\|ref\|ZP_00718430.1\| hypothetical protein EcolE1_01004035 [Escherichia coli E110019], gi\|1... SYDP_ECO45 - Protein Syd OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=syd PE=3 SV=1 EG12959 - SecY-interacting protein / SecY-interacting protein; putative SecYEG quality control protein gi\|191168559, gi... - gi\|75228246\|ref\|ZP_00714903.1\| hypothetical protein EcolB7_01003435 [Escherichia coli B7A], gi\|19116... SYDP_ECO8A - Protein Syd OS=Escherichia coli O8 (strain IAI1) GN=syd PE=3 SV=1 gi\|194415634, gi... - gi\|75212587\|ref\|ZP_00712611.1\| hypothetical protein EcolB_01000674 [Escherichia coli B171], gi\|19442... SYDP_ECO7I - Protein Syd OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=syd PE=3 SV=1 SYDP_ECOHS - Protein Syd OS=Escherichia coli O9:H4 (strain HS) GN=syd PE=3 SV=1 SYDP_ECO55 - Protein Syd OS=Escherichia coli (strain 55989 / EAEC) GN=syd PE=3 SV=1 SYDP_SHISS - Protein Syd OS=Shigella sonnei (strain Ss046) GN=syd PE=3 SV=1 gi\|75511936, gi\|... - gi\|75511936\|ref\|ZP_00734539.1\| hypothetical protein Ecol5_01003806 [Escherichia coli 53638], gi\|1884... gi\|75256868, gi\|... - gi\|75256868\|ref\|ZP_00728462.1\| hypothetical protein EcolE2_01003288 [Escherichia coli E22], gi\|19306... gi\|190908520, gi... - gi\|75241817\|ref\|ZP_00725636.1\| hypothetical protein EcolF_01001177 [Escherichia coli F11], gi\|191171... EG12959 - SecY-interacting protein / SecY-interacting protein; putative SecYEG quality control protein SYDP_ECO24 - Protein Syd OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=syd PE=3 SV=1 SYDP_ECOSM - Protein Syd OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=syd PE=3 SV=1 SYDP_ECODH - Protein Syd OS=Escherichia coli (strain K12 / DH10B) GN=syd PE=3 SV=1 SYDP_ECO27 - Protein Syd OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=syd PE=3 SV=1 SYDP_ECOSE - Protein Syd OS=Escherichia coli (strain SE11) GN=syd PE=3 SV=1 sp\|B7UHK9\|SYDP_ECO27 - Protein syd OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=syd PE=3 SV=1 gi\|227834602, gi... - gi\|227888333\|ref\|ZP_04006138.1\| SecY interacting protein Syd [Escherichia coli 83972], gi\|227834602\|... gi\|237706577, gi... - gi\|237706577\|ref\|ZP_04537058.1\| syd protein [Escherichia sp. 3_2_53FAA], gi\|226899617\|gb\|EEH85876.1\|... SYDP_ECOBW - Protein Syd OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=syd PE=3 SV=1 SYDP_ECOLC - Protein Syd OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=syd PE=3 SV=1 gi\|242378340, gi... - gi\|251786067\|ref\|YP_003000371.1\| hypothetical protein B21_02600 [Escherichia coli BL21], gi\|24237834... gi\|254289478, gi... - gi\|254289478\|ref\|YP_003055226.1\| SecY interacting protein Syd [Escherichia coli BL21(DE3)], gi\|25397... gi\|226839470, gi... - gi\|254037846\|ref\|ZP_04871904.1\| syd [Escherichia sp. 1_1_43], gi\|226839470\|gb\|EEH71491.1\| syd [Esche... gi\|253974620, gi... - gi\|254162719\|ref\|YP_003045827.1\| SecY interacting protein Syd [Escherichia coli B str. REL606], gi\|2... SYDP_ECOL6 - Protein syd OS=Escherichia coli O6 GN=syd PE=3 SV=1	4.0E-83	[1..181]	[1..181]
gi\|189003577, gi... - gi\|189003577\|gb\|EDU72563.1\| syd protein [Escherichia coli O157:H7 str. EC4076], gi\|168778785\|ref\|ZP_... gi\|168777582, gi... - gi\|187767218\|gb\|EDU31062.1\| syd protein [Escherichia coli O157:H7 str. EC4196], gi\|168777582\|ref\|ZP_... gi\|15832907, gi\|... - gi\|15832907\|ref\|NP_311680.1\| SecY interacting protein Syd [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189363846, gi... - gi\|189363846\|gb\|EDU82265.1\| syd protein [Escherichia coli O157:H7 str. EC4486], gi\|168766764\|ref\|ZP_... gi\|168764510, gi... - gi\|189365499\|gb\|EDU83915.1\| syd protein [Escherichia coli O157:H7 str. EC4501], gi\|168764510\|ref\|ZP_... gi\|208733300, gi... - gi\|208812023\|ref\|ZP_03253352.1\| syd protein [Escherichia coli O157:H7 str. EC4045], gi\|208733300\|gb\|... gi\|195936397 - gi\|195936397\|ref\|ZP_03081779.1\| SecY interacting protein Syd [Escherichia coli O157:H7 str. EC4024] gi\|189375499, gi... - gi\|189375499\|gb\|EDU93915.1\| syd protein [Escherichia coli O157:H7 str. EC508], gi\|168802522\|ref\|ZP_0... gi\|189372203, gi... - gi\|189372203\|gb\|EDU90619.1\| syd protein [Escherichia coli O157:H7 str. EC869], gi\|168788055\|ref\|ZP_0... gi\|189354714, gi... - gi\|189354714\|gb\|EDU73133.1\| syd protein [Escherichia coli O157:H7 str. EC4401], gi\|168758488\|ref\|ZP_... SYDP_ECO57 - Protein Syd OS=Escherichia coli O157:H7 GN=syd PE=3 SV=1 gi\|188014893, gi... - gi\|188014893\|gb\|EDU53015.1\| syd protein [Escherichia coli O157:H7 str. EC4113], gi\|168751008\|ref\|ZP_... gi\|209761360, gi... - pir\|\|G85930 interacts with secY [imported] - Escherichia coli (strain O157:H7, substrain EDL933), p... gi\|15803315, gi\|... - gi\|15803315\|ref\|NP_289348.1\| SecY interacting protein Syd [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|217327097, gi... - gi\|217327097\|ref\|ZP_03443180.1\| syd protein [Escherichia coli O157:H7 str. TW14588], gi\|217319464\|gb... SYDP_ECO5E - Protein Syd OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=syd PE=3 SV=1 gi\|208820519, gi... - gi\|208820519\|ref\|ZP_03260839.1\| syd protein [Escherichia coli O157:H7 str. EC4042], gi\|208740642\|gb\|... gi\|254794734, gi... - gi\|254794734\|ref\|YP_003079571.1\| hypothetical protein ECSP_3745 [Escherichia coli O157:H7 str. TW143...	1.0E-82	[1..181]	[1..181]
SYDP_SHIFL - Protein Syd OS=Shigella flexneri GN=syd PE=3 SV=1 gi\|24053205, gi\|... - gi\|24114077\|ref\|NP_708587.1\| SecY interacting protein Syd [Shigella flexneri 2a str. 301], gi\|240532... gi\|30064138, gi\|... - gi\|30064138\|ref\|NP_838309.1\| SecY interacting protein Syd [Shigella flexneri 2a str. 2457T], gi\|3004...	1.0E-82	[1..181]	[1..181]
SYDP_SHIB3 - Protein Syd OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=syd PE=3 SV=1 SYDP_SHIF8 - Protein Syd OS=Shigella flexneri serotype 5b (strain 8401) GN=syd PE=3 SV=1	3.0E-82	[1..181]	[1..181]
gi\|194421406, gi... - gi\|83584951\|ref\|ZP_00923607.1\| hypothetical protein Ecol1_01003845 [Escherichia coli 101-1], gi\|1944...	2.0E-81	[1..181]	[1..181]
SYDP_YERPE - Protein Syd OS=Yersinia pestis GN=syd PE=3 SV=1 gi\|165921043, gi... - gi\|165927147\|ref\|ZP_02222979.1\| syd protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|16... SYDP_YERPS - Protein syd OS=Yersinia pseudotuberculosis GN=syd PE=3 SV=1 gi\|166207480, gi... - gi\|166211709\|ref\|ZP_02237744.1\| syd protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|166011923, gi... - gi\|166011923\|ref\|ZP_02232821.1\| syd protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|16598... gi\|166962599, gi... - gi\|167419858\|ref\|ZP_02311611.1\| syd protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|167050425, gi... - gi\|167399717\|ref\|ZP_02305235.1\| syd protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1670... gi\|229704119, gi... - gi\|229837742\|ref\|ZP_04457902.1\| hypothetical protein YPS_1673 [Yersinia pestis Pestoides A], gi\|2297... gi\|229840964, gi... - gi\|229840964\|ref\|ZP_04461123.1\| hypothetical protein YPH_3319 [Yersinia pestis biovar Orientalis str... gi\|229689941, gi... - gi\|229843065\|ref\|ZP_04463215.1\| hypothetical protein YPF_1423 [Yersinia pestis biovar Orientalis str... SYDP_YERPP - Protein Syd OS=Yersinia pestis (strain Pestoides F) GN=syd PE=3 SV=1 SYDP_YERPG - Protein Syd OS=Yersinia pestis bv. Antiqua (strain Angola) GN=syd PE=3 SV=1 SYDP_YERPS - Protein Syd OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=syd PE=3 SV=1 gi\|45437449, gi\|... - gi\|45442584\|ref\|NP_994123.1\| SecY interacting protein Syd [Yersinia pestis biovar Microtus str. 9100... gi\|22127022, gi\|... - gi\|22127022\|ref\|NP_670445.1\| SecY interacting protein Syd [Yersinia pestis KIM], gi\|21960070\|gb\|AAM8... gi\|89105126, gi\|... - gi\|89105126\|ref\|ZP_01177651.1\| hypothetical protein Ypesb_01000860 [Yersinia pestis biovar Orientali... SYDP_YERPA - Protein Syd OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=syd PE=3 SV=1 SYDP_YERPN - Protein Syd OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=syd PE=3 SV=1 gi\|167468864 - gi\|167468864\|ref\|ZP_02333568.1\| syd protein [Yersinia pestis FV-1] gi\|167425403, gi... - gi\|167425403\|ref\|ZP_02317156.1\| syd protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... SYDP_YERPB - Protein Syd OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=syd PE=3 SV=1 SYDP_YERPY - Protein Syd OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=syd PE=3 SV=1	2.0E-81	[1..181]	[1..181]
SYDP_SHIDS - Protein Syd OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=syd PE=3 SV=1	6.0E-81	[1..181]	[1..181]
SYDP_YERP3 - Protein Syd OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=syd PE=3 SV=1	9.0E-81	[1..181]	[1..181]
gi\|25332850 - pir\|\|AB0127 Syd protein [imported] - Yersinia pestis (strain CO92) gi\|149290578, gi... - gi\|149366964\|ref\|ZP_01888997.1\| Syd protein [Yersinia pestis CA88-4125], gi\|149290578\|gb\|EDM40654.1\|... gi\|15979102, gi\|... - gi\|218928203\|ref\|YP_002346078.1\| SecY interacting protein Syd [Yersinia pestis CO92], gi\|16121335\|re...	3.0E-80	[4..181]	[2..179]
SYDP_VIBPA - Protein syd OS=Vibrio parahaemolyticus GN=syd PE=3 SV=1 SYDP_VIBPA - Protein Syd OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=syd PE=3 SV=1 gi\|149747493, gi... - gi\|153839023\|ref\|ZP_01991690.1\| protein syd [Vibrio parahaemolyticus AQ3810], gi\|149747493\|gb\|EDM584...	5.0E-79	[1..181]	[1..181]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELTAQALK AFTTRYCDAW QEKHGSWPLS EELYGVPSPC IISSTRDAVY WQPQPFEGEE  60
   61 NVNAVERAFD IMVQPALHAF YTTQFAGDMP AQFADEKLTL LQTWSQDDFR RVQENLIGHL 120
  121 VTQKRLKLPP TLFIATQENE LEVISVCNLS GEVIKETLGT RNRTVLAATL AEFLTQLNPL 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	117.958607
Match:	PF07348.3
Description:	No description for PF07348.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits