YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194736345, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194736345, gi....

Description	E-value	Query Range	Subject Range
gi\|218557923, gi... - gi\|218557923\|ref\|YP_002390836.1\| cryptic curlin major subunit [Escherichia coli S88], gi\|218364692\|e... gi\|218704450, gi... - gi\|218704450\|ref\|YP_002411969.1\| cryptic curlin major subunit [Escherichia coli UMN026], gi\|21843154... gi\|117623231, gi... - gi\|117623231\|ref\|YP_852144.1\| cryptic curlin major subunit [Escherichia coli APEC O1], gi\|115512355\|... gi\|91210192, gi\|... - gi\|91210192\|ref\|YP_540178.1\| cryptic curlin major subunit [Escherichia coli UTI89], gi\|91071766\|gb\|A... gi\|170517600, gi... - gi\|170679882\|ref\|YP_001744141.1\| major curlin protein CsgA [Escherichia coli SMS-3-5], gi\|170517600\|... gi\|215486252, gi... - gi\|215486252\|ref\|YP_002328683.1\| cryptic curlin major subunit [Escherichia coli O127:H6 str. E2348/6... gi\|237706975, gi... - gi\|237706975\|ref\|ZP_04537456.1\| curlin major subunit CsgA [Escherichia sp. 3_2_53FAA], gi\|226898185\|...	2.0E-20	[1..151]	[1..151]
gi\|290425 - gi\|290425\|gb\|AAA23616.1\| curlin subunit gi\|290425 - gi\|290425\|gb\|AAA23616.1\| curlin subunit	3.0E-20	[1..151]	[1..151]
gi\|170080694, gi... - gi\|170080694\|ref\|YP_001730014.1\| cryptic curlin major subunit [Escherichia coli str. K-12 substr. DH... gi\|209918296, gi... - gi\|209918296\|ref\|YP_002292380.1\| cryptic curlin major subunit [Escherichia coli SE11], gi\|209911555\|... gi\|218553620, gi... - gi\|218553620\|ref\|YP_002386533.1\| cryptic curlin major subunit [Escherichia coli IAI1], gi\|218360388\|... gi\|218351309, gi... - gi\|218694577\|ref\|YP_002402244.1\| cryptic curlin major subunit [Escherichia coli 55989], gi\|218351309... gi\|194422989, gi... - gi\|83586421\|ref\|ZP_00925055.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli 101-1], g... EG11489 - curlin subunit, amyloid curli fibers, cryptic / Curli subunit, major; CsgA curlin, cryptic gi\|157157267, gi... - gi\|75190103\|ref\|ZP_00703370.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli E24377A],... gi\|157160565, gi... - gi\|75195228\|ref\|ZP_00705298.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli HS], gi\|1... gi\|194428439, gi... - gi\|75210318\|ref\|ZP_00710480.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli B171], gi... gi\|124498785, gi... - gi\|124531166\|ref\|ZP_01701521.1\| CsgA [Escherichia coli B], gi\|124498785\|gb\|EAY46288.1\| CsgA [Escheri... gi\|169755489, gi... - gi\|170020561\|ref\|YP_001725515.1\| cryptic curlin major subunit [Escherichia coli ATCC 8739], gi\|16975... gi\|1651511, gi\|8... - gi\|89107887\|ref\|AP_001667.1\| cryptic curlin major subunit [Escherichia coli str. K-12 substr. W3110]... gi\|190903015, gi... - gi\|75229949\|ref\|ZP_00716466.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli B7A], gi\|... gi\|254161149, gi... - gi\|254161149\|ref\|YP_003044257.1\| cryptic curlin major subunit [Escherichia coli B str. REL606], gi\|2... CSGA_ECOLI - Major curlin subunit precursor - Escherichia coli gi\|75235958, gi\|... - gi\|75235958\|ref\|ZP_00720095.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli E110019],... gi\|253773933, gi... - gi\|254287957\|ref\|YP_003053705.1\| cryptic curlin major subunit [Escherichia coli BL21(DE3)], gi\|25397... EG11489 - curlin subunit, amyloid curli fibers, cryptic / Curli subunit, major; CsgA curlin, cryptic gi\|192927831, gi... - gi\|75257481\|ref\|ZP_00728984.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli E22], gi\|... gi\|242376848, gi... - gi\|251784575\|ref\|YP_002998879.1\| hypothetical protein B21_01046 [Escherichia coli BL21], gi\|24237684... gi\|75513488, gi\|... - gi\|75513488\|ref\|ZP_00735892.1\| COG1404: Subtilisin-like serine proteases [Escherichia coli 53638], g... gi\|238860681, gi... - gi\|238900297\|ref\|YP_002926093.1\| cryptic curlin major subunit [Escherichia coli BW2952], gi\|23886068... gi\|82544493, gi\|... - gi\|82544493\|ref\|YP_408440.1\| cryptic curlin major subunit [Shigella boydii Sb227], gi\|81245904\|gb\|AB...	4.0E-20	[1..151]	[1..151]
gi\|2275121 - gi\|2275121\|emb\|CAA04151.1\| AgfA protein [Salmonella typhimurium] gi\|2275121\|emb\|C... - AgfA protein [Salmonella typhimurium]	1.0E-19	[1..151]	[1..151]
gi\|189358157, gi... - gi\|189358157\|gb\|EDU76576.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189363267, gi... - gi\|189363267\|gb\|EDU81686.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|189368670, gi... - gi\|189368670\|gb\|EDU87086.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|254792426, gi... - gi\|254792426\|ref\|YP_003077263.1\| cryptic curlin major subunit [Escherichia coli O157:H7 str. TW14359... gi\|171986607, gi... - pir\|\|H85665 hypothetical protein csgA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12514574, gi\|... - gi\|15801159\|ref\|NP_287176.1\| cryptic curlin major subunit [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|217318875, gi... - gi\|217328448\|ref\|ZP_03444530.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. TW14588], g... gi\|209399619, gi... - gi\|209399619\|ref\|YP_002269890.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4115], g... gi\|208728136, gi... - gi\|208808335\|ref\|ZP_03250672.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4206], gi... gi\|195935431 - gi\|195935431\|ref\|ZP_03080813.1\| cryptic curlin major subunit [Escherichia coli O157:H7 str. EC4024] CSGA_ECO57 - Major curlin subunit OS=Escherichia coli O157:H7 GN=csgA PE=3 SV=1 gi\|208822241, gi... - gi\|208822241\|ref\|ZP_03262560.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4042], gi... gi\|13360880, gi\|... - gi\|15830674\|ref\|NP_309447.1\| cryptic curlin major subunit [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208815166, gi... - gi\|208815166\|ref\|ZP_03256345.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4045], gi... gi\|168783569, gi... - gi\|188999078\|gb\|EDU68064.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168773884, gi... - gi\|187770403\|gb\|EDU34247.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189378334, gi... - gi\|189378334\|gb\|EDU96750.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|189370503, gi... - gi\|189370503\|gb\|EDU88919.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC869], gi\|1687...	2.0E-19	[1..151]	[1..152]
gi\|73855072, gi\|... - gi\|74311595\|ref\|YP_310014.1\| cryptic curlin major subunit [Shigella sonnei Ss046], gi\|73855072\|gb\|AA...	2.0E-19	[1..151]	[1..150]
gi\|110641219, gi... - gi\|110641219\|ref\|YP_668949.1\| cryptic curlin major subunit [Escherichia coli 536], gi\|110342811\|gb\|A... gi\|218426559, gi... - gi\|218688995\|ref\|YP_002397207.1\| cryptic curlin major subunit [Escherichia coli ED1a], gi\|218426559\|... gi\|190907313, gi... - gi\|75240641\|ref\|ZP_00724558.1\| COG5651: PPE-repeat proteins [Escherichia coli F11], gi\|191172429\|ref... gi\|227836806, gi... - gi\|227886602\|ref\|ZP_04004407.1\| cryptic curlin major subunit [Escherichia coli 83972], gi\|227836806\|...	5.0E-19	[1..151]	[1..152]
gi\|26247179, gi\|... - gi\|26247179\|ref\|NP_753219.1\| cryptic curlin major subunit [Escherichia coli CFT073], gi\|26107580\|gb\|...	2.0E-18	[1..151]	[1..152]
gi\|31790498 - gi\|31790498\|emb\|CAD56675.1\| curlin-csgA protein [Citrobacter freundii]	4.0E-18	[1..151]	[1..149]
gi\|31790494 - gi\|31790494\|emb\|CAD56672.1\| curlin-csgA protein [Citrobacter sp. Fec2]	2.0E-17	[1..151]	[1..150]

Back

Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLKVAAFA AIVVSGSALA GVVPQWGGGG NHNGGGNSSG PDSTLSIYQY GSANAALALQ  60
   61 SDARKSETTI TQSGYGNGAD VGQGADNSTI ELTQNGFRNN ATIDQWNAKN SDITVGQYGG 120
  121 NNAALVNQTA SDSSVMVRQV GFGNNATANQ Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits