YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170288755, gi...
Organism:	Thermotoga sp. RQ2
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170288755, gi....

Description	E-value	Query Range	Subject Range
Y099_PYRHO - UPF0097 protein PH0099 OS=Pyrococcus horikoshii GN=PH0099 PE=1 SV=1 THPR_PYRHO - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	205.0	[0..1]	[181..1]
THPR_PYRFU - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	202.0	[0..1]	[181..1]
gi\|7446640, gi\|5... - pir\|\|C75197 conserved hypothetical protein PAB0062 - Pyrococcus abyssi (strain Orsay), gi\|5457535\|e... gi\|14520320, gi\|... - gi\|5457535\|emb\|CAB49026.1\| 2'-5' RNA ligase [Pyrococcus abyssi GE5], gi\|14520320\|ref\|NP_125795.1\| hy...	200.0	[0..1]	[180..1]
gi\|71041774 - gi\|71041774\|pdb\|1VGJ\|A Chain A, Crystal Structure Of 2'-5' Rna Ligase From Pyrococcus Horikoshii	198.0	[0..2]	[181..2]
gi\|57641673, gi\|... - gi\|57641673\|ref\|YP_184151.1\| 2'-5' RNA ligase [Thermococcus kodakarensis KOD1], gi\|57159997\|dbj\|BAD8...	195.0	[0..1]	[180..1]
THPR_METJA - RNA 2',3'-cyclic phosphodiesterase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ... Y1568_METJA, YF6... - (Q58963) Hypothetical UPF0097 protein MJ1568, UPF0097 protein MJ1568 OS=Methanocaldococcus jannaschi...	185.0	[0..1]	[177..1]
THPR_METTH - RNA 2',3'-cyclic phosphodiesterase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DS... gi\|7446637 - gi\|7446637\|pir\|\|C69177 conserved hypothetical protein MTH583 - Methanobacterium thermoautotrophicum ...	183.0	[0..1]	[179..3]
YL57_ARCFU, Y215... - (O28125) Hypothetical UPF0097 protein AF2157, UPF0097 protein AF_2157 OS=Archaeoglobus fulgidus GN=A... THPR_ARCFU - RNA 2',3'-cyclic phosphodiesterase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 /...	177.0	[0..1]	[177..1]
gi\|19888015, gi\|... - gi\|20094803\|ref\|NP_614650.1\| 2'-5' RNA ligase [Methanopyrus kandleri AV19], gi\|19888015\|gb\|AAM02580....	174.0	[0..2]	[177..5]
gi\|48845785, gi\|... - gi\|78224713\|ref\|YP_386460.1\| 2',5' RNA ligase [Geobacter metallireducens GS-15], gi\|78195968\|gb\|ABB3...	173.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTFIAIDVN EEVKKQASEI IEKLMKRGFG ATWVSEENMH LTLFFLGEVD EQKISEIAEH  60
   61 LCRRVRGFPS FSFTVKGFGY FKRKMSPRVF WLGVENTDRL MKLYEELRNE LSHHGFSFEE 120
  121 KFVPHITIGR VKYYPDKWEK LIEDIDFPPI EVAVDRFKIY SSTLTPTGPI YKVLYECQFE 180
  181 GGLIRYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.30103
Match:	1vdxA
Description:	Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits