YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214001678
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	635 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214001678.

Description	E-value	Query Range	Subject Range
gi\|168264748, gi... - gi\|205346840\|gb\|EDZ33471.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=uup] [protein=ABC transporter ATPase] [protein_id=YP_005236794.1] [location=1110350..1112257] gi\|205341542, gi... - gi\|205341542\|gb\|EDZ28306.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|167993434, gi... - gi\|205328529\|gb\|EDZ15293.1\| ABC transporter ATP-binding protein uup [Salmonella enterica subsp. ente... gi\|168243850, gi... - gi\|205337121\|gb\|EDZ23885.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|161614744, gi... - gi\|161614744\|ref\|YP_001588709.1\| ABC transporter ATPase component [Salmonella enterica subsp. enteri... gi\|205321496, gi... - gi\|205321496\|gb\|EDZ09335.1\| ABC transporter ATP-binding protein uup [Salmonella enterica subsp. ente... gi\|16764421, gi\|... - gi\|16764421\|ref\|NP_460036.1\| ABC transporter ATPase component [Salmonella typhimurium LT2], gi\|16419... gi\|206708210, gi... - gi\|207856407\|ref\|YP_002243058.1\| ABC transporter ATPase component [Salmonella enterica subsp. enteri... gi\|224468958, gi... - gi\|224584431\|ref\|YP_002638229.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent... gi\|197265341, gi... - gi\|197265341\|ref\|ZP_03165415.1\| ABC transporter ATP-binding protein uup [Salmonella enterica subsp. ... gi\|198242644, gi... - gi\|198242644\|ref\|YP_002214995.1\| ABC transporter ATP-binding protein uup [Salmonella enterica subsp.... gi\|194445231, gi... - gi\|194445231\|ref\|YP_002040265.1\| ABC transporter ATP-binding protein uup [Salmonella enterica subsp.... gi\|194410016, gi... - gi\|194451712\|ref\|YP_002045064.1\| ABC transporter ATPase component [Salmonella enterica subsp. enteri...	0.0	[1..635]	[1..635]
gi\|56128198, gi\|... - gi\|56413941\|ref\|YP_151016.1\| ABC transporter ATPase component [Salmonella enterica subsp. enterica s... gi\|197362864, gi... - gi\|197362864\|ref\|YP_002142501.1\| ABC transporter ATPase component [Salmonella enterica subsp. enteri...	0.0	[1..635]	[1..635]
gi\|110641138, gi... - gi\|110641138\|ref\|YP_668868.1\| ABC transporter ATPase component [Escherichia coli 536], gi\|110342730\|... gi\|191172066, gi... - gi\|191172066\|ref\|ZP_03033610.1\| ABC transporter, ATP-binding protein [Escherichia coli F11], gi\|1909...	0.0	[1..634]	[1..634]
gi\|13360493, gi\|... - gi\|15830287\|ref\|NP_309060.1\| ABC transporter ATPase component [Escherichia coli O157:H7 str. Sakai],... gi\|13360493, gi\|... - gi\|15830287\|ref\|NP_309060.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|209774518, gi... - pir\|\|A90758 hypothetical protein ECs1033 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254591549, gi... - gi\|254792149\|ref\|YP_003076986.1\| DNA-binding ABC ATPase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|217320932, gi... - gi\|217324711\|ref\|ZP_03440795.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208728357, gi... - gi\|208808556\|ref\|ZP_03250893.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208815442, gi... - gi\|208815442\|ref\|ZP_03256621.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208738123, gi... - gi\|208822638\|ref\|ZP_03262957.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|209399572, gi... - gi\|209399572\|ref\|YP_002269618.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str.... gi\|189366816, gi... - gi\|189366816\|gb\|EDU85232.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC45... gi\|188998783, gi... - gi\|188998783\|gb\|EDU67769.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC40... gi\|189372599, gi... - gi\|189372599\|gb\|EDU91015.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC86... gi\|195939637 - gi\|195939637\|ref\|ZP_03085019.1\| ABC transporter ATPase component [Escherichia coli O157:H7 str. EC40... gi\|168751212, gi... - gi\|188014708\|gb\|EDU52830.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41...	0.0	[1..634]	[1..634]
gi\|26246970, gi\|... - gi\|26246970\|ref\|NP_753010.1\| ABC transporter ATPase component [Escherichia coli CFT073], gi\|26107370... gi\|227884092, gi... - gi\|227884092\|ref\|ZP_04001897.1\| ABC superfamily ATP binding cassette transporter ABC protein [Escher...	0.0	[1..634]	[1..634]
gi\|91071618, gi\|... - gi\|91210044\|ref\|YP_540030.1\| ABC transporter ATPase component [Escherichia coli UTI89], gi\|91071618\|... gi\|117623160, gi... - gi\|117623160\|ref\|YP_852073.1\| ABC transporter ATPase component [Escherichia coli APEC O1], gi\|115512... gi\|218557847, gi... - gi\|218557847\|ref\|YP_002390760.1\| ABC transporter ATPase component [Escherichia coli S88], gi\|2183646... gi\|237707068, gi... - gi\|237707068\|ref\|ZP_04537549.1\| ABC transporter [Escherichia sp. 3_2_53FAA], gi\|226898278\|gb\|EEH8453...	0.0	[1..634]	[1..634]
gi\|24112362, gi\|... - gi\|24112362\|ref\|NP_706872.1\| ABC transporter ATPase component [Shigella flexneri 2a str. 301], gi\|24... gi\|30062486, gi\|... - gi\|30062486\|ref\|NP_836657.1\| ABC transporter ATPase component [Shigella flexneri 2a str. 2457T], gi\|...	0.0	[1..634]	[1..634]
gi\|110804965, gi... - gi\|110804965\|ref\|YP_688485.1\| ABC transporter ATPase component [Shigella flexneri 5 str. 8401], gi\|1...	0.0	[1..634]	[1..634]
gi\|25384264 - pir\|\|G85621 hypothetical protein uup [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|15800808, gi\|... - gi\|15800808\|ref\|NP_286824.1\| ABC transporter ATPase component [Escherichia coli O157:H7 EDL933], gi\|...	0.0	[1..634]	[1..634]
gi\|75241017 - gi\|75241017\|ref\|ZP_00724906.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase...	0.0	[6..634]	[1..629]

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Predicted Domain #1

Region A:
Residues: [1-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLISMHGAW LSFSDAPLLD NAELHIEDNE RVCLVGRNGA GKSTLMKILN REQGLDDGRI  60
   61 IYEQDLIVAR LQQDPPRNIA GSVYDFVAEG IEEQAEYLKR YHEISRLVMT DPSEKNLNEM 120
  121 ARVQEQLDHH NLWQLENRIN EVLAQLGLDP NAALSSLSGG WLRKAALGRA LVSNPRVLLL 180
  181 DEPTNHLDIE TIDWLEGFLK TFNGTIIFIS HDRSFIRNMA TRIVDLDRGK LVTYPGNYDQ 240
  241 YLLEKEEALR VEELQNAEFD RKLAQEEVWI RQGIKARRTR NEGRVRALKA MRRERSERRE 300
  301 VMGTAKMQVE EATRSGKIVF EMENVDYQVE GKQLVKDFSA QVQRGDKIAL IGPNGCGKTT 360
  361 LLKLMLGQLQ ADSGRIHVGT KLEVAYFDQH RAELDPEKTV MDNLAEGKQE VMVNGKPRHV 420
  421 LGYLQDFLFH PKRAMTPVRA LSGGERNRLL LARLFLKPSN LLILDEPTND LDVETLELLE 480
  481 ELIDGYQGTV LLVSHDRQFV DNTVTECWIF EGGGKIGRYI GGYHDARAQQ EQHLATKQPM 540
  541 TKKNEEVIAP KAEIVKRGSS KLSYKLQREL EQLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [575-635]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQLEDLEAKL EALQAQVADA AFFSQPHEQT QKVLADLSQA EQELEQAFER WEYLEGLKNG  60
   61 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits