YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167549697, gi...
Organism:	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167549697, gi....

Description	E-value	Query Range	Subject Range
gi\|33149130, gi\|... - gi\|33152905\|ref\|NP_874258.1\| naphthoate synthase [Haemophilus ducreyi 35000HP], gi\|33149130\|gb\|AAP96...	4.0E-81	[1..285]	[1..285]
gi\|52307899, gi\|... - gi\|52425847\|ref\|YP_088984.1\| naphthoate synthase [Mannheimia succiniciproducens MBEL55E], gi\|5230789...	2.0E-80	[1..285]	[1..285]
gi\|46143479 - gi\|46143479\|ref\|ZP_00135155.2\| COG0447: Dihydroxynaphthoic acid synthase [Actinobacillus pleuropneum... gi\|126098078, gi... - gi\|126209286\|ref\|YP_001054511.1\| naphthoate synthase [Actinobacillus pleuropneumoniae L20], gi\|12609... gi\|165877362, gi... - gi\|165977261\|ref\|YP_001652854.1\| naphthoate synthase [Actinobacillus pleuropneumoniae serovar 3 str.... gi\|190151179, gi... - gi\|190151179\|ref\|YP_001969704.1\| naphthoate synthase [Actinobacillus pleuropneumoniae serovar 7 str....	2.0E-80	[1..285]	[1..285]
gi\|74276945, gi\|... - gi\|75429737\|ref\|ZP_00732399.1\| dihydroxynaphthoic acid synthase [Actinobacillus succinogenes 130Z], ...	7.0E-80	[1..285]	[1..285]
gi\|62128510, gi\|... - gi\|62180877\|ref\|YP_217294.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Choler...	1.0E-79	[1..285]	[1..285]
MENB_PASMU - Naphthoate synthase OS=Pasteurella multocida GN=menB PE=3 SV=1 MENB_PASMU - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Pasteurella multocida (strain Pm70) GN=menB PE=3 SV=1	1.0E-79	[1..285]	[1..285]
gi\|168755017, gi... - gi\|189357659\|gb\|EDU76078.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4401], gi\|168755017... gi\|189368239, gi... - gi\|189368239\|gb\|EDU86655.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4501], gi\|168761296... gi\|189362842, gi... - gi\|189362842\|gb\|EDU81261.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4486], gi\|168767891... gi\|191166479, gi... - gi\|75230351\|ref\|ZP_00716841.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli B7A], gi\|... gi\|187771046, gi... - gi\|187771046\|gb\|EDU34890.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4196], gi\|168773009... gi\|73856261, gi\|... - gi\|74312784\|ref\|YP_311203.1\| naphthoate synthase [Shigella sonnei Ss046], gi\|73856261\|gb\|AAZ88968.1\|... gi\|189001938, gi... - gi\|189001938\|gb\|EDU70924.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4076], gi\|168780120... gi\|13362620, gi\|... - gi\|15832404\|ref\|NP_311177.1\| naphthoate synthase [Escherichia coli O157:H7 str. Sakai], gi\|13362620\|... gi\|168787173, gi... - gi\|189372934\|gb\|EDU91350.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC869], gi\|168787173\|... gi\|75177945, gi\|... - gi\|75177945\|ref\|ZP_00698007.1\| COG0447: Dihydroxynaphthoic acid synthase [Shigella boydii BS512], gi... gi\|189378951, gi... - gi\|189378951\|gb\|EDU97367.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC508], gi\|168798435\|... gi\|254593558, gi... - gi\|254794158\|ref\|YP_003078995.1\| dihydroxynaphthoic acid synthetase [Escherichia coli O157:H7 str. T... gi\|209765278, gi... - pir\|\|F91022 dihydroxynaphtoic acid synthetase [imported] - Escherichia coli (strain O157:H7, substra... gi\|13362620, gi\|... - gi\|15832404\|ref\|NP_311177.1\| naphthoate synthase [Escherichia coli O157:H7], gi\|13362620\|dbj\|BAB3657... gi\|195935642 - gi\|195935642\|ref\|ZP_03081024.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4024] gi\|208807748, gi... - gi\|208807748\|ref\|ZP_03250085.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|81246155, gi\|... - gi\|82544744\|ref\|YP_408691.1\| naphthoate synthase [Shigella boydii Sb227], gi\|81246155\|gb\|ABB66863.1\|... gi\|208812836, gi... - gi\|208812836\|ref\|ZP_03254165.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208738818, gi... - gi\|208818695\|ref\|ZP_03259015.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|209161270, gi... - gi\|209399870\|ref\|YP_002271675.1\| naphthoate synthase [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|217319851, gi... - gi\|217327484\|ref\|ZP_03443567.1\| naphthoate synthase [Escherichia coli O157:H7 str. TW14588], gi\|2173...	1.0E-79	[1..285]	[1..285]
gi\|12516610, gi\|... - gi\|15802813\|ref\|NP_288840.1\| naphthoate synthase [Escherichia coli O157:H7 EDL933], gi\|12516610\|gb\|A... gi\|25291822 - pir\|\|G85866 dihydroxynaphtoic acid synthetase [imported] - Escherichia coli (strain O157:H7, substra...	2.0E-79	[1..285]	[1..285]
gi\|110642471, gi... - gi\|110642471\|ref\|YP_670201.1\| naphthoate synthase [Escherichia coli 536], gi\|110344063\|gb\|ABG70300.1... gi\|157157379, gi... - gi\|75187049\|ref\|ZP_00700316.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli E24377A],... gi\|157067429, gi... - gi\|75196305\|ref\|ZP_00706375.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli HS], gi\|1... gi\|1799616, gi\|8... - gi\|89109080\|ref\|AP_002860.1\| dihydroxynaphthoic acid synthetase [Escherichia coli str. K-12 substr. ... EG11368 - dihydroxynaphthoic acid synthetase / 1,4-Dihydroxy-2-naphthoyl-CoA (DHNA-CoA) synthase; menaquinone ... gi\|194424707, gi... - gi\|83588249\|ref\|ZP_00926874.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli 101-1], g... gi\|91073131, gi\|... - gi\|91211557\|ref\|YP_541543.1\| naphthoate synthase [Escherichia coli UTI89], gi\|91073131\|gb\|ABE08012.1... gi\|218365948, gi... - gi\|218559179\|ref\|YP_002392092.1\| naphthoate synthase [Escherichia coli S88], gi\|218365948\|emb\|CAR036... gi\|218427990, gi... - gi\|218690426\|ref\|YP_002398638.1\| naphthoate synthase [Escherichia coli ED1a], gi\|218427990\|emb\|CAR08... gi\|218352597, gi... - gi\|218695865\|ref\|YP_002403532.1\| naphthoate synthase [Escherichia coli 55989], gi\|218352597\|emb\|CAU9... gi\|253974175, gi... - gi\|254162274\|ref\|YP_003045382.1\| naphthoate synthase [Escherichia coli B str. REL606], gi\|253974175\|... gi\|253772813, gi... - gi\|254289035\|ref\|YP_003054783.1\| naphthoate synthase [Escherichia coli BL21(DE3)], gi\|253978342\|gb\|A... gi\|251785624, gi... - gi\|251785624\|ref\|YP_002999928.1\| hypothetical protein B21_02148 [Escherichia coli BL21], gi\|24237789... gi\|117624455, gi... - gi\|117624455\|ref\|YP_853368.1\| naphthoate synthase [Escherichia coli APEC O1], gi\|115513579\|gb\|ABJ016... gi\|238860771, gi... - gi\|238901437\|ref\|YP_002927233.1\| dihydroxynaphthoic acid synthetase [Escherichia coli BW2952], gi\|23... gi\|124501903, gi... - gi\|124526432\|ref\|ZP_01698385.1\| naphthoate synthase [Escherichia coli B], gi\|124501903\|gb\|EAY49364.1... gi\|169754351, gi... - gi\|170019423\|ref\|YP_001724377.1\| naphthoate synthase [Escherichia coli ATCC 8739], gi\|169754351\|gb\|A... gi\|237704740, gi... - gi\|237704740\|ref\|ZP_04535221.1\| naphthoate synthase [Escherichia sp. 3_2_53FAA], gi\|226901106\|gb\|EEH... gi\|169889716, gi... - gi\|170081881\|ref\|YP_001731201.1\| dihydroxynaphthoic acid synthetase [Escherichia coli str. K-12 subs... gi\|227835672, gi... - gi\|227887322\|ref\|ZP_04005127.1\| naphthoate synthase [Escherichia coli 83972], gi\|227835672\|gb\|EEJ461... gi\|194433321, gi... - gi\|194433321\|ref\|ZP_03065601.1\| naphthoate synthase [Shigella dysenteriae 1012], gi\|194418415\|gb\|EDX... gi\|209912972, gi... - gi\|209919713\|ref\|YP_002293797.1\| naphthoate synthase [Escherichia coli SE11], gi\|209912972\|dbj\|BAG78... gi\|215265552, gi... - gi\|215487480\|ref\|YP_002329911.1\| naphthoate synthase [Escherichia coli O127:H6 str. E2348/69], gi\|21... gi\|218548287, gi... - gi\|218548287\|ref\|YP_002382078.1\| naphthoate synthase [Escherichia fergusonii ATCC 35469], gi\|2183558... gi\|218554822, gi... - gi\|218554822\|ref\|YP_002387735.1\| naphthoate synthase [Escherichia coli IAI1], gi\|218361590\|emb\|CAQ99... MENB_ECOLI - Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid synthetase) (DHNA synthetase) - Escherich... MENB_ECOL6 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli O6 GN=menB PE=3 SV=1 MENB_ECOL6 - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC... gi\|191170074, gi... - gi\|75243078\|ref\|ZP_00726784.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli F11], gi\|... EG11368 - dihydroxynaphthoic acid synthetase / 1,4-Dihydroxy-2-naphthoyl-CoA (DHNA-CoA) synthase; menaquinone ... gi\|75259726, gi\|... - gi\|75259726\|ref\|ZP_00731028.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli E22], gi\|... gi\|194414755, gi... - gi\|75211671\|ref\|ZP_00711750.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli B171], gi... gi\|193068154, gi... - gi\|75238051\|ref\|ZP_00722056.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli E110019],... gi\|188488842, gi... - gi\|75512740\|ref\|ZP_00735242.1\| COG0447: Dihydroxynaphthoic acid synthase [Escherichia coli 53638], g...	2.0E-79	[1..285]	[1..285]
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	4.0E-79	[20..278]	[1..257]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYPDETMLY APVEWHDCSE GYTDIRYEKS TDGIAKITIN RPQVRNAFRP LTVKEMIQAL  60
   61 ADARYDDNVG VIILTGEGDK AFCAGGDQKV RGDYGGYQDD SGVHHLNVLD FQRQIRTCPK 120
  121 PVVAMVAGYS IGGGHVLHMM CDLTIAAENA IFGQTGPKVG SFDGGWGASY MARIVGQKKA 180
  181 REIWFLCRQY DAQQALDMGL VNTVVPLADL EKETVRWCRE MLQNSPMALR CLKAALNADC 240
  241 DGQAGLQELA GNATMLFYMT EEGQEGRNAF NQKRQPDFSK FKRNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.522879
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits