YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213646837
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213646837.

Description	E-value	Query Range	Subject Range
EUTH_SALTY - Ethanolamine utilization protein EutH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... lcl\|NC_016856.1_... - [gene=eutH] [protein=putative transport protein] [protein_id=YP_005238546.1] [location=complement(26... EUTH_SALTY - Ethanolamine utilization protein eutH OS=Salmonella typhimurium GN=eutH PE=3 SV=3 gi\|205349449, gi... - gi\|205349449\|gb\|EDZ36080.1\| ethanolamine utilization protein EutH [Salmonella enterica subsp. enteri... gi\|167991758, gi... - gi\|205329910\|gb\|EDZ16674.1\| ethanolamine utilization protein EutH [Salmonella enterica subsp. enteri... gi\|167549528, gi... - gi\|205325264\|gb\|EDZ13103.1\| ethanolamine utilization protein EutH [Salmonella enterica subsp. enteri... gi\|161362158, gi... - gi\|161612794\|ref\|YP_001586759.1\| hypothetical protein SPAB_00493 [Salmonella enterica subsp. enteric... EUTH_SALTY - Ethanolamine utilization protein eutH OS=Salmonella typhimurium GN=eutH PE=3 SV=3 gi\|204929504, gi... - gi\|204929504\|ref\|ZP_03220578.1\| ethanolamine utilization protein EutH [Salmonella enterica subsp. en... gi\|168817792, gi... - gi\|205344748\|gb\|EDZ31512.1\| ethanolamine utilization protein EutH [Salmonella enterica subsp. enteri...	0.0	[1..408]	[1..408]
gi\|56412656, gi\|... - gi\|56412656\|ref\|YP_149731.1\| hypothetical protein SPA0408 [Salmonella enterica subsp. enterica serov... gi\|197361591, gi... - gi\|197361591\|ref\|YP_002141227.1\| hypothetical protein SSPA0382 [Salmonella enterica subsp. enterica ...	0.0	[1..408]	[1..408]
gi\|224583006, gi... - gi\|224583006\|ref\|YP_002636804.1\| hypothetical protein SPC_1199 [Salmonella enterica subsp. enterica ... gi\|207857872, gi... - gi\|207857872\|ref\|YP_002244523.1\| hypothetical protein SEN2440 [Salmonella enterica subsp. enterica s... gi\|205353565, gi... - gi\|205353565\|ref\|YP_002227366.1\| hypothetical protein SG2491 [Salmonella enterica subsp. enterica se... gi\|62128659, gi\|... - gi\|62181026\|ref\|YP_217443.1\| hypothetical protein SC2456 [Salmonella enterica subsp. enterica serova...	0.0	[1..408]	[1..408]
gi\|254162426, gi... - gi\|254162426\|ref\|YP_003045534.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|253772658, gi... - gi\|254289187\|ref\|YP_003054935.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|83586900, gi\|... - gi\|83586900\|ref\|ZP_00925531.1\| COG3192: Ethanolamine utilization protein [Escherichia coli 101-1], g... gi\|251785778, gi... - gi\|251785778\|ref\|YP_003000082.1\| hypothetical protein B21_02305 [Escherichia coli BL21], gi\|24237805...	0.0	[1..408]	[1..408]
gi\|191172907, gi... - gi\|75240101\|ref\|ZP_00724060.1\| COG3192: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|218370894, gi... - gi\|218700908\|ref\|YP_002408537.1\| putative ethanolamine transporter [Escherichia coli IAI39], gi\|2183... gi\|110344216, gi... - gi\|110642624\|ref\|YP_670354.1\| ethanolamine utilization protein EutH [Escherichia coli 536], gi\|11034...	0.0	[1..408]	[1..408]
gi\|238862514, gi... - gi\|238901615\|ref\|YP_002927411.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... EG14182 - ethanolamine transporter / Ethanolamine transport EUTH_ECOLI - Ethanolamine utilization protein eutH (Putative ethanolamine transporter) - Escherichia coli gi\|85675408, gi\|... - gi\|89109257\|ref\|AP_003037.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|188493496, gi... - gi\|75515788\|ref\|ZP_00737923.1\| COG3192: Ethanolamine utilization protein [Escherichia coli 53638], g... gi\|170019264, gi... - gi\|170019264\|ref\|YP_001724218.1\| ethanolamine utilisation protein EutH [Escherichia coli ATCC 8739],... EG14182 - ethanolamine transporter / Ethanolamine transport gi\|170082061, gi... - gi\|170082061\|ref\|YP_001731381.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|193064757, gi... - gi\|75257255\|ref\|ZP_00728779.1\| COG3192: Ethanolamine utilization protein [Escherichia coli E22], gi\|... gi\|75237805, gi\|... - gi\|75237805\|ref\|ZP_00721821.1\| COG3192: Ethanolamine utilization protein [Escherichia coli E110019],... gi\|209913183, gi... - gi\|209919924\|ref\|YP_002294008.1\| ethanolamine utilization protein EutH [Escherichia coli SE11], gi\|2... gi\|194414677, gi... - gi\|75211413\|ref\|ZP_00711503.1\| COG3192: Ethanolamine utilization protein [Escherichia coli B171], gi... gi\|218554975, gi... - gi\|218554975\|ref\|YP_002387888.1\| putative ethanolamine transporter [Escherichia coli IAI1], gi\|21836... gi\|157161910, gi... - gi\|75196457\|ref\|ZP_00706527.1\| COG3192: Ethanolamine utilization protein [Escherichia coli HS], gi\|1... gi\|218352810, gi... - gi\|218696078\|ref\|YP_002403745.1\| putative ethanolamine transporter [Escherichia coli 55989], gi\|2183... gi\|157077338, gi... - gi\|75187196\|ref\|ZP_00700463.1\| COG3192: Ethanolamine utilization protein [Escherichia coli E24377A],... gi\|124499624, gi... - gi\|124529764\|ref\|ZP_01700641.1\| Ethanolamine utilisation protein, EutH [Escherichia coli B], gi\|1244...	0.0	[1..408]	[1..408]
gi\|74312977, gi\|... - gi\|74312977\|ref\|YP_311396.1\| EutH [Shigella sonnei Ss046], gi\|73856454\|gb\|AAZ89161.1\| EutH [Shigella...	0.0	[1..408]	[1..408]
gi\|191167659, gi... - gi\|75229226\|ref\|ZP_00715794.1\| COG3192: Ethanolamine utilization protein [Escherichia coli B7A], gi\|...	0.0	[1..408]	[1..408]
gi\|194432073, gi... - gi\|83570666\|ref\|ZP_00922109.1\| COG3192: Ethanolamine utilization protein [Shigella dysenteriae 1012]...	0.0	[1..408]	[1..408]
gi\|3885921\|gb\|AA... - putative integral membrane protein [Salmonella typhimurium] gi\|3885921 - gi\|3885921\|gb\|AAC78121.1\| putative integral membrane protein [Salmonella typhimurium]	0.0	[1..408]	[1..415]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGINEIIMYI MMFFMLIAAV DRILSQFGGS ARFLGKFGKS IEESGGQFEE GFMAMGALGL  60
   61 AMVGMTALAP VLAHVLGPVI IPVYEMLGAN PSMFAGTLLA CDMGGFFLAK ELA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGDVAAWLYS GLILGSMMGP TIVFSIPVAL GIIEPSDRRY LALGVLAGIV TIPIGCIAGG  60
   61 LIAMYSGVQI NGQPVEFTFA LILMNMIPVL IVAVLVALGL KFIPEKMING FQIFAKFLVA 120
  121 LITIGLAAAV VKFLLGWELI PGLDPIFMAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [264-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDKPGEVMRA IEVIGSISCV LLGAYPMVLL LTRWFEKPLM NVGKLLNVNN IAAAGMVATL  60
   61 ANNIPMFGMM KQMDTRGKVI NCAFAVSAAF ALVDHLGFAA ANMNAMIFPM IVGKLIGGVT 120
  121 AIGVAMMLVP KDDAAQVKTE AEAQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits