YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168207913, gi...
Organism:	Clostridium perfringens E str. JGS1987
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168207913, gi....

Description	E-value	Query Range	Subject Range
RS18_KORVE - 30S ribosomal protein S18 OS=Koribacter versatilis (strain Ellin345) GN=rpsR PE=3 SV=1	108.0	[0..5]	[77..47]
RS18_BACCN - 30S ribosomal protein S18 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	106.0	[0..4]	[80..1]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	105.0	[0..10]	[79..3]
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	105.0	[0..10]	[79..3]
RS18_BACSK - 30S ribosomal protein S18 OS=Bacillus clausii (strain KSM-K16) GN=rpsR PE=3 SV=1	105.0	[0..6]	[80..1]
gi\|89084338, gi\|... - gi\|89100929\|ref\|ZP_01173776.1\| ribosomal protein S18 [Bacillus sp. NRRL B-14911], gi\|89084338\|gb\|EAR...	104.0	[0..1]	[79..1]
gi\|228271886, gi... - gi\|228474191\|ref\|ZP_04058928.1\| ribosomal protein S18 [Staphylococcus hominis SK119], gi\|228271886\|g... RS18_STAHJ - 30S ribosomal protein S18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsR PE=3 SV=1	104.0	[0..15]	[80..13]
RS18_STRPG - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsR PE=3 SV=1 RS18_STRPB - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsR PE=3 SV=1 RS18_STRPC - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsR PE=3 SV=1 RS18_STRPF - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsR PE=3 SV=1 RS18_STRPM - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28 GN=rpsR PE=3 SV=1 gi\|15675656, gi\|... - gi\|15675656\|ref\|NP_269830.1\| 30S ribosomal protein S18 [Streptococcus pyogenes M1 GAS], gi\|13622868\|... RS18_STRS7 - 30S ribosomal protein S18 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsR PE=3 SV=1 RS18_STRP1 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M1 GN=rpsR PE=3 SV=1 RS18_STRPM - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rpsR PE=3 SV=1 RS18_STRE4 - 30S ribosomal protein S18 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsR PE=3 SV=1 RS18_STRP3 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 GN=rpsR PE=3 SV=1 gi\|242391905, gi... - gi\|251783273\|ref\|YP_002997578.1\| 30S ribosomal protein S18 [Streptococcus dysgalactiae subsp. equisi... RS18_STRP6 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6 GN=rpsR PE=3 SV=1 RS18_STRP8 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18 GN=rpsR PE=3 SV=1 gi\|225869195, gi... - gi\|225869195\|ref\|YP_002745143.1\| 30S ribosomal protein S18 [Streptococcus equi subsp. zooepidemicus]... RS18_STRPQ - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rpsR PE=3 SV=1 RS18_STRP6 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN... RS18_STREM - 30S ribosomal protein S18 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsR PE=3... RS18_STRU0 - 30S ribosomal protein S18 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsR PE=3 SV=1 RS18_STRPD - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsR PE=3 SV=1 RS18_STRP3 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=r... RS18_STRP8 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rpsR PE=3 SV=1 RS18_STRPY - (P66475) 30S ribosomal protein S18 gi\|71911366, gi\|... - gi\|71911366\|ref\|YP_282916.1\| 30S ribosomal protein S18 [Streptococcus pyogenes MGAS5005], gi\|7185414...	103.0	[0..1]	[80..1]
RS18_BACST - (P10806) 30S ribosomal protein S18 (BS21) (BS19)	103.0	[0..17]	[80..13]
RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsR PE=3 SV=1 gi\|229497916, gi... - gi\|229497916\|ref\|ZP_04391615.1\| ribosomal protein S18 [Geobacillus sp. Y412MC52], gi\|229331342\|gb\|EE... gi\|196249872, gi... - gi\|196249872\|ref\|ZP_03148568.1\| ribosomal protein S18 [Geobacillus sp. G11MC16], gi\|196210748\|gb\|EDY... gi\|221086943, gi... - gi\|221086943\|ref\|ZP_03556483.1\| ribosomal protein S18 [Geobacillus sp. Y412MC61], gi\|220708996\|gb\|EE... RS18_GEOTN - 30S ribosomal protein S18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsR PE=3 SV=2 RS18_GEOSE - 30S ribosomal protein S18 OS=Geobacillus stearothermophilus GN=rpsR PE=1 SV=2 RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus GN=rpsR PE=3 SV=1	103.0	[0..17]	[80..14]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVKRGGKF RRARKKVCIF CVDKAESIDY KDVAKLKKYI TERGKILPRR ISGTCAKHQR  60
   61 QLTDAIKRSR NIALLPFTTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.74194835757561	bayes_pls_golite062009
structural molecule activity	3.45591847600399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: