YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213053206
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	351 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213053206.

Description	E-value	Query Range	Subject Range
gi\|56415468, gi\|... - gi\|56415468\|ref\|YP_152543.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar... gi\|197364397, gi... - gi\|197364397\|ref\|YP_002144034.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser...	5.0E-65	[1..351]	[1..351]
gi\|205354813, gi... - gi\|205354813\|ref\|YP_002228614.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|207858807, gi... - gi\|207858807\|ref\|YP_002245458.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|16766855, gi\|... - gi\|16766855\|ref\|NP_462470.1\| cell division protein FtsX [Salmonella typhimurium LT2], gi\|16422129\|gb... gi\|198246240, gi... - gi\|198246240\|ref\|YP_002217527.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|199604633, gi... - gi\|200387535\|ref\|ZP_03214147.1\| cell division protein FtsX [Salmonella enterica subsp. enterica sero... gi\|197214061, gi... - gi\|197250358\|ref\|YP_002148492.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|197261743, gi... - gi\|197261743\|ref\|ZP_03161817.1\| cell division protein FtsX [Salmonella enterica subsp. enterica sero... gi\|194406861, gi... - gi\|194448557\|ref\|YP_002047594.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|194458149, gi... - gi\|194471785\|ref\|ZP_03077769.1\| cell division protein FtsX [Salmonella enterica subsp. enterica sero... gi\|195632323, gi... - gi\|195632323\|gb\|EDX50807.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar ... gi\|194445196, gi... - gi\|194445196\|ref\|YP_002042814.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|168241721, gi... - gi\|205338783\|gb\|EDZ25547.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar ... gi\|168260702, gi... - gi\|205350417\|gb\|EDZ37048.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar ... gi\|167990785, gi... - gi\|205330728\|gb\|EDZ17492.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar ... gi\|168232716, gi... - gi\|205333158\|gb\|EDZ19922.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar ... gi\|161616617, gi... - gi\|161616617\|ref\|YP_001590582.1\| cell division protein FtsX [Salmonella enterica subsp. enterica ser... gi\|205325860, gi... - gi\|205325860\|gb\|EDZ13699.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar ... gi\|238910430 - gi\|238910430\|ref\|ZP_04654267.1\| cell division protein FtsX [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=ftsX] [protein=cell division protein FtsX] [protein_id=YP_005239781.1] [location=complement(37...	7.0E-65	[1..351]	[1..351]
gi\|62182068, gi\|... - gi\|62182068\|ref\|YP_218485.1\| cell division protein FtsX [Salmonella enterica subsp. enterica serovar... gi\|224585361, gi... - gi\|224585361\|ref\|YP_002639160.1\| cell division protein [Salmonella enterica subsp. enterica serovar ...	1.0E-64	[1..351]	[1..351]
gi\|26110506, gi\|... - gi\|26250077\|ref\|NP_756117.1\| Cell division protein ftsX [Escherichia coli CFT073], gi\|26110506\|gb\|AA... gi\|24114722, gi\|... - ref\|NP_709232.1\| cell division membrane protein [Shigella flexneri 2a str. 301], gb\|AAN44939.1\| cel... gi\|226839136, gi... - gi\|254038630\|ref\|ZP_04872686.1\| cell division protein ftsX [Escherichia sp. 1_1_43], gi\|226839136\|gb... tr\|A0A0G3I0T7\|A0... - Inner membrane putative ABC superfamilytransporter permease protein OS=Escherichia coli (strain K12)... gi\|91074525, gi\|... - gi\|91212951\|ref\|YP_542937.1\| cell division membrane protein [Escherichia coli UTI89], gi\|91074525\|gb... gi\|117625740, gi... - gi\|117625740\|ref\|YP_859063.1\| cell division protein FtsX [Escherichia coli APEC O1], gi\|115514864\|gb... gi\|226902473, gi... - gi\|237703209\|ref\|ZP_04533690.1\| cell division protein ftsX [Escherichia sp. 3_2_53FAA], gi\|226902473...	2.0E-59	[1..351]	[10..361]
gi\|75179907 - gi\|75179907\|ref\|ZP_00699894.1\| COG2177: Cell division protein [Shigella boydii BS512]	2.0E-59	[1..351]	[6..357]
gi\|187731843, gi... - gi\|187731843\|ref\|YP_001882151.1\| cell division protein FtsX [Shigella boydii CDC 3083-94], gi\|187428... gi\|170018306, gi... - gi\|170018306\|ref\|YP_001723260.1\| cell division protein FtsX [Escherichia coli ATCC 8739], gi\|1697532... gi\|124528619, gi... - gi\|124528619\|ref\|ZP_01699897.1\| putative protein insertion ABC transporter, inner membrane subunit F... gi\|82545825, gi\|... - gi\|82545825\|ref\|YP_409772.1\| cell division protein FtsX [Shigella boydii Sb227], gi\|81247236\|gb\|ABB6...	3.0E-59	[1..351]	[1..352]
gi\|74314062, gi\|... - gi\|74314062\|ref\|YP_312481.1\| cell division protein FtsX [Shigella sonnei Ss046], gi\|73857539\|gb\|AAZ9...	3.0E-59	[1..351]	[1..352]
gi\|75516073 - gi\|75516073\|ref\|ZP_00738191.1\| COG2177: Cell division protein [Escherichia coli 53638] gi\|75260251 - gi\|75260251\|ref\|ZP_00731519.1\| COG2177: Cell division protein [Escherichia coli E22] gi\|75242741 - gi\|75242741\|ref\|ZP_00726485.1\| COG2177: Cell division protein [Escherichia coli F11] gi\|75227172 - gi\|75227172\|ref\|ZP_00713980.1\| COG2177: Cell division protein [Escherichia coli B7A] gi\|75211827 - gi\|75211827\|ref\|ZP_00711891.1\| COG2177: Cell division protein [Escherichia coli B171] gi\|75197388 - gi\|75197388\|ref\|ZP_00707458.1\| COG2177: Cell division protein [Escherichia coli HS] gi\|75188234 - gi\|75188234\|ref\|ZP_00701501.1\| COG2177: Cell division protein [Escherichia coli E24377A] gi\|83588676 - gi\|83588676\|ref\|ZP_00927300.1\| COG2177: Cell division protein [Escherichia coli 101-1] gi\|194420680, gi... - gi\|83571613\|ref\|ZP_00923053.1\| COG2177: Cell division protein [Shigella dysenteriae 1012], gi\|194431... gi\|227839487, gi... - gi\|227883608\|ref\|ZP_04001413.1\| cell division protein FtsX [Escherichia coli 83972], gi\|227839487\|gb...	3.0E-59	[1..351]	[6..357]
gi\|218429311, gi... - gi\|218691747\|ref\|YP_002399959.1\| cell division protein FtsX [Escherichia coli ED1a], gi\|218429311\|em... gi\|218367299, gi... - gi\|218560530\|ref\|YP_002393443.1\| cell division protein FtsX [Escherichia coli S88], gi\|218367299\|emb... gi\|218702207, gi... - gi\|218702207\|ref\|YP_002409836.1\| cell division protein FtsX [Escherichia coli IAI39], gi\|218372193\|e... gi\|218353877, gi... - gi\|218697145\|ref\|YP_002404812.1\| cell division protein FtsX [Escherichia coli 55989], gi\|218353877\|e... gi\|110643702, gi... - gi\|110643702\|ref\|YP_671432.1\| cell division protein FtsX [Escherichia coli 536], gi\|110345294\|gb\|ABG... gi\|215266809, gi... - gi\|215488737\|ref\|YP_002331168.1\| cell division protein FtsX [Escherichia coli O127:H6 str. E2348/69]... gi\|110616838, gi... - gi\|110807290\|ref\|YP_690810.1\| cell division protein FtsX [Shigella flexneri 5 str. 8401], gi\|1106168... gi\|209920921, gi... - gi\|209920921\|ref\|YP_002295005.1\| cell division protein FtsX [Escherichia coli SE11], gi\|209914180\|db... gi\|218362781, gi... - gi\|218556013\|ref\|YP_002388926.1\| cell division protein FtsX [Escherichia coli IAI1], gi\|218362781\|em... gi\|218358265, gi... - gi\|218550724\|ref\|YP_002384515.1\| cell division protein FtsX [Escherichia fergusonii ATCC 35469], gi\|... gi\|208733242, gi... - gi\|208811965\|ref\|ZP_03253294.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4045], g... gi\|208726273, gi... - gi\|208806472\|ref\|ZP_03248809.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4206], g... gi\|209158741, gi... - gi\|209397341\|ref\|YP_002272906.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4115], ... gi\|208820629, gi... - gi\|208820629\|ref\|ZP_03260949.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4042], g... gi\|194426993, gi... - gi\|194426993\|ref\|ZP_03059545.1\| cell division protein FtsX [Escherichia coli B171], gi\|194414954\|gb\|... gi\|192932614, gi... - gi\|193061824\|ref\|ZP_03042921.1\| cell division protein FtsX [Escherichia coli E22], gi\|192932614\|gb\|E... gi\|195934956 - gi\|195934956\|ref\|ZP_03080338.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4024] gi\|194425133, gi... - gi\|194435590\|ref\|ZP_03067693.1\| cell division protein FtsX [Escherichia coli 101-1], gi\|194425133\|gb... gi\|218707056, gi... - gi\|218707056\|ref\|YP_002414575.1\| cell division protein FtsX [Escherichia coli UMN026], gi\|218434153\|... FTSX_ECOLI - Cell division protein ftsX - Escherichia coli gi\|188487924, gi... - gi\|188492725\|ref\|ZP_02999995.1\| cell division protein FtsX [Escherichia coli 53638], gi\|188487924\|gb... gi\|170521910, gi... - gi\|170684192\|ref\|YP_001745711.1\| cell division protein FtsX [Escherichia coli SMS-3-5], gi\|170521910... gi\|190909203, gi... - gi\|191170395\|ref\|ZP_03031948.1\| cell division protein FtsX [Escherichia coli F11], gi\|190909203\|gb\|E... gi\|191169494, gi... - gi\|191169494\|ref\|ZP_03031226.1\| cell division protein FtsX [Escherichia coli B7A], gi\|190900455\|gb\|E... gi\|168785283, gi... - gi\|189374605\|gb\|EDU93021.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189002362, gi... - gi\|189002362\|gb\|EDU71348.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|170082976, gi... - gi\|170082976\|ref\|YP_001732296.1\| ABC transporter membrane protein [Escherichia coli str. K-12 substr... gi\|189380113, gi... - gi\|189380113\|gb\|EDU98529.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|189358838, gi... - gi\|189358838\|gb\|EDU77257.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|188018490, gi... - gi\|188018490\|gb\|EDU56612.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|187771648, gi... - gi\|187771648\|gb\|EDU35492.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168765825, gi... - gi\|189364787\|gb\|EDU83206.1\| cell division protein FtsX [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|162138349 - gi\|162138349\|ref\|YP_542937.2\| cell division protein FtsX [Escherichia coli UTI89] FTSX_ECOL6 - Cell division protein FtsX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ftsX PE... FTSX_SHIFL - Cell division protein FtsX OS=Shigella flexneri GN=ftsX PE=3 SV=1 gi\|30043523, gi\|... - gi\|30065261\|ref\|NP_839432.1\| cell division protein FtsX [Shigella flexneri 2a str. 2457T], gi\|300435... FTSX_ECOL6 - Cell division protein FtsX OS=Escherichia coli O6 GN=ftsX PE=3 SV=1 EG10345 - putative ABC transporter permease / Integral membrane protein invoved in cell division; binds FtsE t... EG10345 - putative ABC transporter permease / Integral membrane protein invoved in cell division; binds FtsE t... gi\|238902553, gi... - gi\|238902553\|ref\|YP_002928349.1\| putative transporter subunit: membrane component of ABC superfamily... gi\|242378983, gi... - gi\|251786710\|ref\|YP_003001014.1\| hypothetical protein B21_03264 [Escherichia coli BL21], gi\|24237898... gi\|254795382, gi... - gi\|254795382\|ref\|YP_003080219.1\| predicted transporter subunit: membrane component of ABC superfamil... gi\|56480348, gi\|... - gi\|56480348\|ref\|NP_709232.2\| cell division protein FtsX [Shigella flexneri 2a str. 301], gi\|56383899... gi\|85676581, gi\|... - gi\|89110550\|ref\|AP_004330.1\| predicted transporter subunit [Escherichia coli str. K-12 substr. W3110... gi\|254290136, gi... - gi\|254290136\|ref\|YP_003055884.1\| predicted transporter subunit: membrane component of ABC superfamil... gi\|82778726, gi\|... - gi\|82778726\|ref\|YP_405075.1\| cell division protein FtsX [Shigella dysenteriae Sd197], gi\|81242874\|gb... gi\|254163386, gi... - gi\|254163386\|ref\|YP_003046494.1\| predicted transporter subunit: membrane component of ABC superfamil... gi\|157068619, gi... - gi\|157162939\|ref\|YP_001460257.1\| cell division protein FtsX [Escherichia coli HS], gi\|157068619\|gb\|A... gi\|157155892, gi... - gi\|157155892\|ref\|YP_001464927.1\| cell division protein FtsX [Escherichia coli E24377A], gi\|157077922...	3.0E-59	[1..351]	[1..352]
gi\|75237061 - gi\|75237061\|ref\|ZP_00721117.1\| COG2177: Cell division protein [Escherichia coli E110019]	4.0E-59	[1..351]	[6..357]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRDAINQI RQFGGRLDRL RKSRGGTGGG RNAPGRQKPT PKPNSRKTNV FNEQVRYAWH  60
   61 GALQDLKSKP LATFLTVMVI AISLTLPSVC YMVYKNVNQA ATQYYPSPQI TVYL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKTLDDDAAA RVVGQLQAEQ GVEKVNYLSR EDALGEFRNW SGFGGALDML EENPLPAVAV  60
   61 VIPKLDFQST ASLNTLRDRI SQINGIDEVR MDDSWFARLA ALTGLVGRVS AMIGVLMVAA 120
  121 VFLVIGNSVR LSIFARRDTI NVQKLIGATD GFILRPFLYG GALLGFSGAF LSLILSEILV 180
  181 MRLSSAVTEV AQVFGTKFDL NGLSFDECLL LLLVCSMIGW IAAWLATVQH LRYFTPD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.508638
Match:	PF02687.12
Description:	No description for PF02687.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits