YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224502434
Organism:	Listeria monocytogenes FSL R2-561
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224502434.

Description	E-value	Query Range	Subject Range
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	206.0	[0..1]	[270..1]
gi\|47096361, gi\|... - gi\|47096361\|ref\|ZP_00233956.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|254900539, gi... - gi\|254900539\|ref\|ZP_05260463.1\| hypothetical protein LmonJ_12014 [Listeria monocytogenes J0161], gi\|... gi\|254937909, gi... - gi\|254937909\|ref\|ZP_05269606.1\| hypothetical protein LmonF6_12304 [Listeria monocytogenes F6900], gi... gi\|127766706, gi... - gi\|254913510\|ref\|ZP_05263522.1\| hypothetical protein LmonJ2_11964 [Listeria monocytogenes J2818], gi...	205.0	[0..1]	[270..1]
gi\|46906513, gi\|... - gi\|46906513\|ref\|YP_012902.1\| HAD superfamily hydrolase [Listeria monocytogenes str. 4b F2365], gi\|46... gi\|47020086, gi\|... - gi\|47091409\|ref\|ZP_00229206.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|133736481, gi... - gi\|254932499\|ref\|ZP_05265858.1\| hypothetical protein LmonH_08708 [Listeria monocytogenes HPB2262], g... gi\|254825676 - gi\|254825676\|ref\|ZP_05230677.1\| hypothetical protein LmonFS_10939 [Listeria monocytogenes FSL J1-194... gi\|226222908, gi... - gi\|226222908\|ref\|YP_002757015.1\| hypothetical protein Lm4b_00300 [Listeria monocytogenes Clip81459],... gi\|255520774 - gi\|255520774\|ref\|ZP_05388011.1\| hypothetical protein LmonocFSL_06026 [Listeria monocytogenes FSL J1-... gi\|254993193 - gi\|254993193\|ref\|ZP_05275383.1\| hypothetical protein LmonocytoFSL_09283 [Listeria monocytogenes FSL ...	204.0	[0..1]	[270..1]
gi\|56911156, gi\|... - gi\|56964913\|ref\|YP_176644.1\| hypothetical protein ABC3149 [Bacillus clausii KSM-K16], gi\|56911156\|db...	202.0	[0..1]	[268..1]
gi\|52787935, gi\|... - gi\|52787935\|ref\|YP_093764.1\| YxeH [Bacillus licheniformis ATCC 14580], gi\|52350437\|gb\|AAU43071.1\| Yx...	201.0	[0..1]	[270..13]
gi\|221316252 - gi\|221316252\|ref\|ZP_03598057.1\| hypothetical protein BsubsN3_21247 [Bacillus subtilis subsp. subtili... YXEH_BACSU - Putative phosphatase YxeH OS=Bacillus subtilis (strain 168) GN=yxeH PE=3 SV=1 YXEH_BACSU - Uncharacterized protein YxeH OS=Bacillus subtilis GN=yxeH PE=3 SV=1 gi\|221321164 - gi\|221321164\|ref\|ZP_03602458.1\| hypothetical protein BsubsJ_21195 [Bacillus subtilis subsp. subtilis... gi\|221325448 - gi\|221325448\|ref\|ZP_03606742.1\| hypothetical protein BsubsS_21346 [Bacillus subtilis subsp. subtilis...	199.0	[0..1]	[270..1]
gi\|29375718, gi\|... - gi\|29375718\|ref\|NP_814872.1\| HAD superfamily hydrolase [Enterococcus faecalis V583], gi\|29343179\|gb\|... gi\|229308703, gi... - gi\|229546179\|ref\|ZP_04434904.1\| HAD superfamily hydrolase [Enterococcus faecalis TX1332], gi\|2293087... gi\|227518396, gi... - gi\|227518396\|ref\|ZP_03948445.1\| HAD superfamily hydrolase [Enterococcus faecalis TX0104], gi\|2270740... gi\|227177898, gi... - gi\|227552928\|ref\|ZP_03982977.1\| HAD superfamily hydrolase [Enterococcus faecalis HH22], gi\|227177898...	199.0	[0..2]	[268..3]
gi\|167992424, gi... - gi\|205329366\|gb\|EDZ16130.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16422404, gi\|... - gi\|16767116\|ref\|NP_462731.1\| sugar phosphatase [Salmonella typhimurium LT2], gi\|16422404\|gb\|AAL22690... lcl\|NC_016856.1_... - [gene=yidA] [protein=sugar phosphatase] [protein_id=YP_005240097.1] [location=complement(4047898..40...	198.0	[0..2]	[269..3]
gi\|224585630, gi... - gi\|224585630\|ref\|YP_002639429.1\| hypothetical protein SPC_3918 [Salmonella enterica subsp. enterica ... gi\|206710860, gi... - gi\|207859057\|ref\|YP_002245708.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Ente... gi\|197241280, gi... - gi\|197263025\|ref\|ZP_03163099.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintp... gi\|194403742, gi... - gi\|194445079\|ref\|YP_002043081.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Newpo... gi\|168260385, gi... - gi\|205350165\|gb\|EDZ36796.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|62182319, gi\|... - gi\|62182319\|ref\|YP_218736.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Cholerae... gi\|205325651, gi... - gi\|205325651\|gb\|EDZ13490.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|161616948, gi... - gi\|161616948\|ref\|YP_001590913.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Para...	198.0	[0..2]	[269..3]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKLIAIDID GTLLTDDHKV TDEVKEAIRQ AKLKGVKVVL CTGRPLVGVE NYLTELELRE  60
   61 EGDYVISFNG AFVQDTFTKE VISHLTLGIE DLKDIYEVSL NSNLHMHFFD DKALYTPNRE 120
  121 IGKYTIVEAY LTGSQLIYKE IENVPEDFIM SKAMFIEEAP ELEVGIAKIP ESFREKYHLV 180
  181 RSTPFYLEIL NRDASKGNAV KELSEKLGIK QSEVICIGDQ ENDVTMLEFA GLGIAMGNAP 240
  241 ERIKQLADYT TASNNDSGVA KAIQKFVLDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.82377518695623	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: