YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|200386498, gi...
Organism:	Salmonella enterica subsp. enterica serovar Virchow str. SL491
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|200386498, gi....

Description	E-value	Query Range	Subject Range
CYAY_ECOHS - Protein CyaY OS=Escherichia coli O9:H4 (strain HS) GN=cyaY PE=3 SV=1	160.0	[0..1]	[106..1]
CYAY_DICCH - Protein CyaY OS=Dickeya chrysanthemi GN=cyaY PE=3 SV=1	160.0	[0..1]	[105..1]
gi\|213649581 - gi\|213649581\|ref\|ZP_03379634.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... gi\|213615880 - gi\|213615880\|ref\|ZP_03371706.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... CYAY_SALTI - Protein cyaY OS=Salmonella typhi GN=cyaY PE=3 SV=1 gi\|213977489 - gi\|213977489\|ref\|ZP_03404748.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... gi\|213855321 - gi\|213855321\|ref\|ZP_03383561.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... gi\|213420156 - gi\|213420156\|ref\|ZP_03353222.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... CYAY_SALTI - Protein CyaY OS=Salmonella typhi GN=cyaY PE=3 SV=1 gi\|213052019 - gi\|213052019\|ref\|ZP_03344897.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... gi\|213581098 - gi\|213581098\|ref\|ZP_03362924.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... gi\|213425405 - gi\|213425405\|ref\|ZP_03358155.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... CYAY_SALG2 - Protein CyaY OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=cyaY PE=3 SV=1 CYAY_SALDC - Protein CyaY OS=Salmonella dublin (strain CT_02021853) GN=cyaY PE=3 SV=1 gi\|29143680, gi\|... - gi\|29143680\|ref\|NP_807022.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar Typh... gi\|213021469 - gi\|213021469\|ref\|ZP_03335916.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T... gi\|16762191 - gi\|16762191\|ref\|NP_457808.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar Typh... CYAY_SALEP - Protein CyaY OS=Salmonella enteritidis PT4 (strain P125109) GN=cyaY PE=3 SV=1 gi\|194459201, gi... - gi\|194472837\|ref\|ZP_03078821.1\| iron donor protein CyaY [Salmonella enterica subsp. enterica serovar... gi\|168233873, gi... - gi\|205332088\|gb\|EDZ18852.1\| iron donor protein CyaY [Salmonella enterica subsp. enterica serovar Ken... gi\|214002711 - gi\|214002711\|ref\|ZP_03413446.1\| frataxin-like protein [Salmonella enterica subsp. enterica serovar T...	159.0	[0..1]	[106..1]
gi\|77978546, gi\|... - gi\|77978546\|ref\|ZP_00833974.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers...	159.0	[0..1]	[105..1]
gi\|238798587, gi... - gi\|77959873\|ref\|ZP_00823807.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers...	158.0	[0..1]	[105..1]
CYAY_ECOL6 - Protein CyaY OS=Escherichia coli O6 GN=cyaY PE=3 SV=1 gi\|227834449, gi... - gi\|227888610\|ref\|ZP_04006415.1\| frataxin family protein [Escherichia coli 83972], gi\|227834449\|gb\|EE... CYAY_ECOL6 - Protein CyaY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cyaY PE=3 SV=1	158.0	[0..1]	[106..1]
gi\|45437819, gi\|... - gi\|45442952\|ref\|NP_994491.1\| frataxin-like protein [Yersinia pestis biovar Microtus str. 91001], gi\|... gi\|22124298, gi\|... - gi\|22124298\|ref\|NP_667721.1\| frataxin-like protein [Yersinia pestis KIM], gi\|21957070\|gb\|AAM83972.1\|...	157.0	[0..1]	[105..3]
gi\|238789379, gi... - gi\|77973627\|ref\|ZP_00829173.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers...	157.0	[0..1]	[105..1]
CYAY_YERPS - Protein CyaY OS=Yersinia pseudotuberculosis GN=cyaY PE=3 SV=1 CYAY_YERPS - Protein CyaY OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=cyaY PE=3 SV=1 CYAY_YERPB - Protein CyaY OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=cyaY PE=3 SV=1 CYAY_YERP3 - Protein CyaY OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=cyaY PE=3 SV=1	157.0	[0..1]	[105..1]
gi\|167468812 - gi\|167468812\|ref\|ZP_02333516.1\| protein CyaY [Yersinia pestis FV-1] gi\|167054795, gi... - gi\|167426276\|ref\|ZP_02318029.1\| iron donor protein CyaY [Yersinia pestis biovar Mediaevalis str. K19... gi\|15981762, gi\|... - gi\|218930850\|ref\|YP_002348725.1\| frataxin-like protein [Yersinia pestis CO92], gi\|16123982\|ref\|NP_40... gi\|270488808\|ref... - iron donor protein CyaY [Yersinia pestis KIM D27] CYAY_YERPG - Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Angola) GN=cyaY PE=3 SV=1 gi\|149289403, gi... - gi\|153997097\|ref\|ZP_02022230.1\| frataxin-like protein [Yersinia pestis CA88-4125], gi\|149289403\|gb\|E... CYAY_YERPP - Protein CyaY OS=Yersinia pestis (strain Pestoides F) GN=cyaY PE=3 SV=1 gi\|165926358, gi... - gi\|165926358\|ref\|ZP_02222190.1\| iron donor protein CyaY [Yersinia pestis biovar Orientalis str. F199... gi\|166213621, gi... - gi\|166213621\|ref\|ZP_02239656.1\| iron donor protein CyaY [Yersinia pestis biovar Antiqua str. B420030... gi\|166011637, gi... - gi\|166011637\|ref\|ZP_02232535.1\| iron donor protein CyaY [Yersinia pestis biovar Antiqua str. E197900... gi\|167421003, gi... - gi\|167421003\|ref\|ZP_02312756.1\| iron donor protein CyaY [Yersinia pestis biovar Orientalis str. MG05... gi\|229837177, gi... - gi\|229837177\|ref\|ZP_04457342.1\| iron-binding frataxin-like protein [Yersinia pestis Pestoides A], gi... gi\|167401816, gi... - gi\|167401816\|ref\|ZP_02307304.1\| iron donor protein CyaY [Yersinia pestis biovar Antiqua str. UG05-04... gi\|229839537, gi... - gi\|229839537\|ref\|ZP_04459696.1\| iron-binding frataxin-like protein [Yersinia pestis biovar Orientali... gi\|229686880, gi... - gi\|229900100\|ref\|ZP_04515237.1\| iron-binding frataxin-like protein [Yersinia pestis biovar Orientali... gi\|294505510\|ref... - frataxin-like protein [Yersinia pestis Z176003] CYAY_YERPE - Protein CyaY OS=Yersinia pestis GN=cyaY PE=3 SV=1 gi\|89104218, gi\|... - gi\|89104218\|ref\|ZP_01176768.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers... CYAY_YERPA - Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=cyaY PE=3 SV=1 CYAY_YERPN - Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=cyaY PE=3 SV=1	157.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSEFHRLA DALWLTIEER LDSWDGDSDI DCEINGGVLT LSFENGSKII INRQEPLHQV  60
   61 WLATKQGGYH FDLKGDEWVC DRSGETFWDL LEQAATQQAG EKVSFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1soyA
Description:	Solution structure of the bacterial frataxin orthologue, CyaY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits