YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194410132, gi...
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194410132, gi....

Description	E-value	Query Range	Subject Range
gi\|238794050, gi... - gi\|77979882\|ref\|ZP_00835298.1\| hypothetical protein YintA_01000378 [Yersinia intermedia ATCC 29909],...	122.0	[0..1]	[74..1]
gi\|77975630, gi\|... - gi\|77975630\|ref\|ZP_00831164.1\| hypothetical protein YfreA_01000274 [Yersinia frederiksenii ATCC 3364...	121.0	[0..1]	[74..1]
gi\|36785375, gi\|... - gi\|37525946\|ref\|NP_929290.1\| hypothetical protein plu2029 [Photorhabdus luminescens subsp. laumondii...	117.0	[0..1]	[74..1]
gi\|157161387, gi... - gi\|75195975\|ref\|ZP_00706045.1\| hypothetical protein EcolH_01001779 [Escherichia coli HS], gi\|1571613...	113.0	[0..1]	[74..1]
gi\|218361267, gi... - gi\|218554499\|ref\|YP_002387412.1\| hypothetical protein ECIAI1_2000 [Escherichia coli IAI1], gi\|218361... gi\|218365542, gi... - gi\|218558773\|ref\|YP_002391686.1\| hypothetical protein ECS88_1969 [Escherichia coli S88], gi\|21836554... gi\|227837231, gi... - gi\|227885658\|ref\|ZP_04003463.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783723... gi\|218427472, gi... - gi\|218689908\|ref\|YP_002398120.1\| hypothetical protein ECED1_2180 [Escherichia coli ED1a], gi\|2184274... gi\|237705871, gi... - gi\|237705871\|ref\|ZP_04536352.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218352254, gi... - gi\|218695522\|ref\|YP_002403189.1\| hypothetical protein EC55989_2136 [Escherichia coli 55989], gi\|2183... gi\|238901124, gi... - gi\|238901124\|ref\|YP_002926920.1\| hypothetical protein BWG_1724 [Escherichia coli BW2952], gi\|2388629... gi\|218699521, gi... - gi\|218699521\|ref\|YP_002407150.1\| hypothetical protein ECIAI39_1140 [Escherichia coli IAI39], gi\|2183... gi\|253324176, gi... - gi\|253773132\|ref\|YP_003035963.1\| hypothetical protein ECBD_1727 [Escherichia coli BL21(DE3)], gi\|253... gi\|218705410, gi... - gi\|218705410\|ref\|YP_002412929.1\| hypothetical protein ECUMN_2207 [Escherichia coli UMN026], gi\|21843... gi\|170019747, gi... - gi\|170019747\|ref\|YP_001724701.1\| hypothetical protein EcolC_1724 [Escherichia coli ATCC 8739], gi\|16... gi\|1736574, gi\|8... - gi\|89108750\|ref\|AP_002530.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|169889398, gi... - gi\|170081563\|ref\|YP_001730883.1\| hypothetical protein ECDH10B_2056 [Escherichia coli str. K-12 subst... gi\|91072708, gi\|... - gi\|91211134\|ref\|YP_541120.1\| hypothetical protein UTI89_C2116 [Escherichia coli UTI89], gi\|91072708\|... gi\|170683059, gi... - gi\|170683059\|ref\|YP_001743328.1\| hypothetical protein EcSMS35_1267 [Escherichia coli SMS-3-5], gi\|17... gi\|170769413, gi... - gi\|170769413\|ref\|ZP_02903866.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|194416802, gi... - gi\|194434967\|ref\|ZP_03067210.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|209919337, gi... - gi\|209919337\|ref\|YP_002293421.1\| hypothetical protein ECSE_2146 [Escherichia coli SE11], gi\|20991259... gi\|215265192, gi... - gi\|215487120\|ref\|YP_002329551.1\| hypothetical protein E2348C_2033 [Escherichia coli O127:H6 str. E23... YECF_ECOL6 - Uncharacterized protein yecF OS=Escherichia coli O6 GN=yecF PE=4 SV=1 EG12861 - DUF2594 family protein / DUF2594 family protein, function unknown, YECF_SHIFL - Uncharacterized protein YecF OS=Shigella flexneri GN=yecF PE=4 SV=1 gi\|110805888, gi... - gi\|110805888\|ref\|YP_689408.1\| hypothetical protein SFV_1959 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24052299, gi\|... - gi\|24113292\|ref\|NP_707802.1\| hypothetical protein SF1958 [Shigella flexneri 2a str. 301], gi\|2405229... gi\|124531453, gi... - gi\|124531453\|ref\|ZP_01701737.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498568\|gb... EG12861 - DUF2594 family protein / DUF2594 family protein, function unknown, YECF_ECOL6 - Uncharacterized protein YecF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yecF ... gi\|81245028, gi\|... - gi\|82543617\|ref\|YP_407564.1\| hypothetical protein SBO_1091 [Shigella boydii Sb227], gi\|81245028\|gb\|A... gi\|30063359, gi\|... - gi\|30063359\|ref\|NP_837530.1\| hypothetical protein S2054 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|75228525, gi\|... - gi\|75228525\|ref\|ZP_00715162.1\| hypothetical protein EcolB7_01003201 [Escherichia coli B7A], gi\|19116... gi\|193071159, gi... - gi\|75233959\|ref\|ZP_00718412.1\| hypothetical protein EcolE1_01004081 [Escherichia coli E110019], gi\|1... gi\|75190937, gi\|... - gi\|75190937\|ref\|ZP_00704204.1\| hypothetical protein EcolE_01004250 [Escherichia coli E24377A], gi\|15... gi\|194412035, gi... - gi\|75208837\|ref\|ZP_00709121.1\| hypothetical protein EcolB_01003985 [Escherichia coli B171], gi\|19442... gi\|74311739, gi\|... - gi\|74311739\|ref\|YP_310158.1\| hypothetical protein SSON_1203 [Shigella sonnei Ss046], gi\|73855216\|gb\|... gi\|81240553, gi\|... - gi\|82776405\|ref\|YP_402754.1\| hypothetical protein SDY_1103 [Shigella dysenteriae Sd197], gi\|81240553... gi\|192925974, gi... - gi\|75255514\|ref\|ZP_00727306.1\| hypothetical protein EcolE2_01004411 [Escherichia coli E22], gi\|19306... gi\|75511463, gi\|... - gi\|75511463\|ref\|ZP_00734138.1\| hypothetical protein Ecol5_01004281 [Escherichia coli 53638], gi\|1884... gi\|83585047, gi\|... - gi\|83585047\|ref\|ZP_00923701.1\| hypothetical protein Ecol1_01003784 [Escherichia coli 101-1], gi\|1944... gi\|187427565, gi... - gi\|75175227\|ref\|ZP_00695543.1\| hypothetical protein SboyB_01004645 [Shigella boydii BS512], gi\|18773... YECF_ECOLI - Hypothetical protein yecF - Escherichia coli	113.0	[0..1]	[74..1]
gi\|25499432, gi\|... - pir\|\|F85808 hypothetical protein yecF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217328833, gi... - gi\|217328833\|ref\|ZP_03444914.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|189370211, gi... - gi\|189370211\|gb\|EDU88627.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|12516013, gi\|... - gi\|15802350\|ref\|NP_288376.1\| hypothetical protein Z3003 [Escherichia coli O157:H7 EDL933], gi\|125160... gi\|13362121, gi\|... - gi\|15831907\|ref\|NP_310680.1\| hypothetical protein ECs2653 [Escherichia coli O157:H7], gi\|13362121\|db... gi\|13362121, gi\|... - gi\|15831907\|ref\|NP_310680.1\| hypothetical protein ECs2653 [Escherichia coli O157:H7 str. Sakai], gi\|...	111.0	[0..1]	[74..1]
gi\|190906436, gi... - gi\|75239187\|ref\|ZP_00723164.1\| hypothetical protein EcolF_01003215 [Escherichia coli F11], gi\|191173...	111.0	[0..1]	[74..1]
gi\|238799116, gi... - gi\|77960268\|ref\|ZP_00824148.1\| hypothetical protein YmolA_01003450 [Yersinia mollaretii ATCC 43969],...	106.0	[0..1]	[74..1]
gi\|238714369, gi... - gi\|77957962\|ref\|ZP_00822005.1\| hypothetical protein YberA_01001843 [Yersinia bercovieri ATCC 43970],...	105.0	[0..1]	[74..1]
gi\|167420303, gi... - gi\|167420303\|ref\|ZP_02312056.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|115347594, gi... - gi\|218928983\|ref\|YP_002346858.1\| hypothetical protein YPO1864 [Yersinia pestis CO92], gi\|16122115\|re... gi\|167401109, gi... - gi\|167401109\|ref\|ZP_02306612.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q66BN7\|Q66BN7_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167470920 - gi\|167470920\|ref\|ZP_02335624.1\| hypothetical protein YpesF_24352 [Yersinia pestis FV-1] gi\|229701236, gi... - gi\|229896313\|ref\|ZP_04511483.1\| hypothetical protein YPS_4134 [Yersinia pestis Pestoides A], gi\|2297... gi\|77635963, gi\|... - gi\|77635963\|ref\|ZP_00798041.1\| hypothetical protein YpesA_01000571 [Yersinia pestis Angola], gi\|1624... gi\|167425789, gi... - gi\|167425789\|ref\|ZP_02317542.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229693587, gi... - gi\|229897250\|ref\|ZP_04512406.1\| hypothetical protein YPH_4272 [Yersinia pestis biovar Orientalis str... gi\|77628930, gi\|... - gi\|77628930\|ref\|ZP_00791516.1\| hypothetical protein YpseI_01000252 [Yersinia pseudotuberculosis IP 3... gi\|165938682, gi... - gi\|89102309\|ref\|ZP_01174952.1\| hypothetical protein Ypesb_01003654 [Yersinia pestis biovar Orientali... gi\|186895178, gi... - gi\|186895178\|ref\|YP_001872290.1\| hypothetical protein YPTS_1866 [Yersinia pseudotuberculosis PB1/+],... gi\|229897978, gi... - gi\|229897978\|ref\|ZP_04513129.1\| hypothetical protein YPF_2396 [Yersinia pestis biovar Orientalis str... gi\|108807238, gi... - gi\|108807238\|ref\|YP_651154.1\| hypothetical protein YPA_1242 [Yersinia pestis Antiqua], gi\|108779151\|... gi\|169751116, gi... - gi\|170024582\|ref\|YP_001721087.1\| hypothetical protein YPK_2357 [Yersinia pseudotuberculosis YPIII], ... gi\|229902792, gi... - gi\|229902792\|ref\|ZP_04517909.1\| hypothetical protein YP516_2539 [Yersinia pestis Nepal516], gi\|22968... gi\|165925999, gi... - gi\|165925999\|ref\|ZP_02221831.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166210453, gi... - gi\|166210453\|ref\|ZP_02236488.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166010808, gi... - gi\|166010808\|ref\|ZP_02231706.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149292603, gi... - gi\|149366190\|ref\|ZP_01888225.1\| hypothetical protein YPE_1396 [Yersinia pestis CA88-4125], gi\|149292... gi\|145210248, gi... - gi\|145598552\|ref\|YP_001162628.1\| hypothetical protein YPDSF_1262 [Yersinia pestis Pestoides F], gi\|1... gi\|25510441 - pir\|\|AE0227 conserved hypothetical protein YPO1864 [imported] - Yersinia pestis (strain CO92) gi\|51596069, gi\|... - gi\|51596069\|ref\|YP_070260.1\| hypothetical protein YPTB1734 [Yersinia pseudotuberculosis IP 32953], g... gi\|45441348, gi\|... - gi\|45441348\|ref\|NP_992887.1\| hypothetical protein YP_1529 [Yersinia pestis biovar Microtus str. 9100...	105.0	[0..1]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPDFSTAE NNQELATEVN CLKAMLTLML QAMGQADAGR VILKMEKQIA QMDDEAQAAV  60
   61 FSSTVKQIKQ AYRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits