YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213854146
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213854146.

Description	E-value	Query Range	Subject Range
gi\|91075664, gi\|... - gi\|91214090\|ref\|YP_544076.1\| periplasmic protein [Escherichia coli UTI89], gi\|91075664\|gb\|ABE10545.1... gi\|226840492, gi... - gi\|254037386\|ref\|ZP_04871463.1\| periplasmic protein [Escherichia sp. 1_1_43], gi\|226840492\|gb\|EEH724... gi\|226902024, gi... - gi\|237704112\|ref\|ZP_04534593.1\| periplasmic protein [Escherichia sp. 3_2_53FAA], gi\|226902024\|gb\|EEH... gi\|26251263, gi\|... - gi\|26251263\|ref\|NP_757303.1\| periplasmic protein [Escherichia coli CFT073], gi\|26111696\|gb\|AAN83877....	156.0	[0..1]	[205..27]
gi\|62182979, gi\|... - gi\|62182979\|ref\|YP_219396.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Choler...	152.0	[0..1]	[205..1]
gi\|197096735, gi... - gi\|197365258\|ref\|YP_002144895.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Pa... gi\|56130592, gi\|... - gi\|56416335\|ref\|YP_153410.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Paraty...	152.0	[0..1]	[205..1]
Q66EW5\|Q66EW5_YERPS - Hyperosmotically inducible periplasmic protein, RpoS-dependent stationary phase gene precursor - Yer... gi\|153947880, gi... - gi\|77631562\|ref\|ZP_00794148.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia pseu... gi\|169752381, gi... - gi\|170025847\|ref\|YP_001722352.1\| periplasmic protein [Yersinia pseudotuberculosis YPIII], gi\|1697523... gi\|51594927, gi\|... - gi\|51594927\|ref\|YP_069118.1\| periplasmic protein [Yersinia pseudotuberculosis IP 32953], gi\|51588209...	146.0	[0..3]	[205..1]
gi\|108774115, gi... - gi\|229900655\|ref\|ZP_04515779.1\| periplasmic protein [Yersinia pestis Nepal516], gi\|229681994\|gb\|EEO7... gi\|166211889, gi... - gi\|166211889\|ref\|ZP_02237924.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis biovar... gi\|167400613, gi... - gi\|167400613\|ref\|ZP_02306122.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis biovar... gi\|166963015, gi... - gi\|167419021\|ref\|ZP_02310774.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis biovar... gi\|167426084, gi... - gi\|167426084\|ref\|ZP_02317837.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis biovar... gi\|167469146 - gi\|167469146\|ref\|ZP_02333850.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis FV-1] gi\|165915665, gi... - gi\|89104394\|ref\|ZP_01176938.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia pest... gi\|108809844, gi... - gi\|108809844\|ref\|YP_653760.1\| periplasmic protein [Yersinia pestis Antiqua], gi\|108781757\|gb\|ABG1581... gi\|77635636, gi\|... - gi\|77635636\|ref\|ZP_00797718.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Yersinia pest... gi\|165927258, gi... - gi\|165927258\|ref\|ZP_02223090.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis biovar... gi\|229690703, gi... - gi\|229842393\|ref\|ZP_04462548.1\| periplasmic protein [Yersinia pestis biovar Orientalis str. India 19... gi\|166009043, gi... - gi\|166009043\|ref\|ZP_02229941.1\| Osmotically induced periplasmic protein OsmY [Yersinia pestis biovar... gi\|229840314, gi... - gi\|229840314\|ref\|ZP_04460473.1\| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2], ... gi\|229836988, gi... - gi\|229836988\|ref\|ZP_04457153.1\| periplasmic protein [Yersinia pestis Pestoides A], gi\|229705931\|gb\|E... gi\|22127619, gi\|... - gi\|22127619\|ref\|NP_671042.1\| periplasmic protein [Yersinia pestis KIM], gi\|21960730\|gb\|AAM87293.1\|AE... gi\|149289937, gi... - gi\|150260529\|ref\|ZP_01917257.1\| osmotically inducible protein Y [Yersinia pestis CA88-4125], gi\|1492... gi\|25509690 - pir\|\|AF0053 osmotically inducible protein Y [imported] - Yersinia pestis (strain CO92) gi\|16120764, gi\|... - gi\|218927632\|ref\|YP_002345507.1\| periplasmic protein [Yersinia pestis CO92], gi\|16120764\|ref\|NP_4040... gi\|45438351, gi\|... - gi\|45443482\|ref\|NP_995021.1\| periplasmic protein [Yersinia pestis biovar Microtus str. 91001], gi\|45...	146.0	[0..3]	[205..1]
gi\|15834588, gi\|... - gi\|15834588\|ref\|NP_313361.1\| periplasmic protein [Escherichia coli O157:H7 str. Sakai], gi\|13364812\|... gi\|209748938, gi... - pir\|\|F91295 hyperosmotically inducible periplasmic protein [imported] - Escherichia coli (strain O15... gi\|254796371, gi... - gi\|254796371\|ref\|YP_003081208.1\| periplasmic protein [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|217325769, gi... - gi\|217325769\|ref\|ZP_03441853.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. TW145... gi\|208733588, gi... - gi\|208812311\|ref\|ZP_03253640.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC404... gi\|208728595, gi... - gi\|208808794\|ref\|ZP_03251131.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC420... gi\|209398467, gi... - gi\|209398467\|ref\|YP_002273896.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC41... gi\|208740775, gi... - gi\|208820652\|ref\|ZP_03260972.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC404... gi\|189374722, gi... - gi\|189404591\|ref\|ZP_02810025.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC869... gi\|189404198, gi... - gi\|189404198\|ref\|ZP_02787733.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC450... gi\|195937647 - gi\|195937647\|ref\|ZP_03083029.1\| periplasmic protein [Escherichia coli O157:H7 str. EC4024] gi\|189405596, gi... - gi\|189405596\|ref\|ZP_02822954.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC508... gi\|189010379, gi... - gi\|189010379\|ref\|ZP_02806671.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC407... gi\|188014908, gi... - gi\|188025091\|ref\|ZP_02776010.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC411... gi\|15834588, gi\|... - gi\|15834588\|ref\|NP_313361.1\| hyperosmotically inducible periplasmic protein [Escherichia coli O157:H... gi\|189402832, gi... - gi\|189402832\|ref\|ZP_02791663.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC448... gi\|189356062, gi... - gi\|189402347\|ref\|ZP_02781800.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC440... gi\|187768020, gi... - gi\|187776283\|ref\|ZP_02801654.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC419...	144.0	[0..1]	[205..1]
gi\|190906565, gi... - gi\|75239562\|ref\|ZP_00723532.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... gi\|75229435, gi\|... - gi\|75229435\|ref\|ZP_00715985.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... gi\|157163823, gi... - gi\|75198190\|ref\|ZP_00708260.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... OSMY_ECOLI - Osmotically-inducible protein Y precursor - Escherichia coli gi\|89111083, gi\|... - gi\|89111083\|ref\|AP_004863.1\| periplasmic protein [Escherichia coli str. K-12 substr. W3110], gi\|8567... gi\|74314810, gi\|... - gi\|74314810\|ref\|YP_313229.1\| periplasmic protein [Shigella sonnei Ss046], gi\|73858287\|gb\|AAZ90994.1\|... gi\|110644812, gi... - gi\|110644812\|ref\|YP_672542.1\| periplasmic protein [Escherichia coli 536], gi\|110346404\|gb\|ABG72641.1... gi\|194421781, gi... - gi\|194439299\|ref\|ZP_03071378.1\| osmotically inducible protein Y [Escherichia coli 101-1], gi\|1944217... gi\|194434175, gi... - gi\|194434175\|ref\|ZP_03066443.1\| osmotically inducible protein Y [Shigella dysenteriae 1012], gi\|1944... gi\|215267759, gi... - gi\|215489687\|ref\|YP_002332118.1\| periplasmic protein [Escherichia coli O127:H6 str. E2348/69], gi\|21... gi\|209921841, gi... - gi\|209921841\|ref\|YP_002295925.1\| periplasmic protein [Escherichia coli SE11], gi\|209915100\|dbj\|BAG80... gi\|218368375, gi... - gi\|218561606\|ref\|YP_002394519.1\| periplasmic protein [Escherichia coli S88], gi\|218368375\|emb\|CAR061... gi\|218363679, gi... - gi\|218556910\|ref\|YP_002389824.1\| periplasmic protein [Escherichia coli IAI1], gi\|218363679\|emb\|CAR01... gi\|218435150, gi... - gi\|218708053\|ref\|YP_002415572.1\| periplasmic protein [Escherichia coli UMN026], gi\|218435150\|emb\|CAR... gi\|218703122, gi... - gi\|218703122\|ref\|YP_002410751.1\| periplasmic protein [Escherichia coli IAI39], gi\|218373108\|emb\|CAR2... gi\|169756593, gi... - gi\|170021665\|ref\|YP_001726619.1\| periplasmic protein [Escherichia coli ATCC 8739], gi\|169756593\|gb\|A... gi\|192926713, gi... - gi\|193065640\|ref\|ZP_03046706.1\| osmotically inducible protein Y [Escherichia coli E22], gi\|192926713... gi\|170083761, gi... - gi\|170083761\|ref\|YP_001733081.1\| periplasmic protein [Escherichia coli str. K-12 substr. DH10B], gi\|... gi\|194412770, gi... - gi\|194429155\|ref\|ZP_03061684.1\| osmotically inducible protein Y [Escherichia coli B171], gi\|19441277... gi\|192956090, gi... - gi\|193070607\|ref\|ZP_03051545.1\| osmotically inducible protein Y [Escherichia coli E110019], gi\|19295... gi\|117626734, gi... - gi\|117626734\|ref\|YP_860057.1\| periplasmic protein [Escherichia coli APEC O1], gi\|115515858\|gb\|ABJ039... gi\|124499235, gi... - gi\|124530344\|ref\|ZP_01701030.1\| transport-associated [Escherichia coli B], gi\|124499235\|gb\|EAY46727.... gi\|227885138, gi... - gi\|227885138\|ref\|ZP_04002943.1\| periplasmic protein [Escherichia coli 83972], gi\|227837967\|gb\|EEJ484... gi\|238862007, gi... - gi\|238903462\|ref\|YP_002929258.1\| periplasmic protein [Escherichia coli BW2952], gi\|238862007\|gb\|ACR6... gi\|242379897, gi... - gi\|251787624\|ref\|YP_003001928.1\| hypothetical protein B21_04217 [Escherichia coli BL21], gi\|24237989... gi\|254164301, gi... - gi\|254164301\|ref\|YP_003047411.1\| periplasmic protein [Escherichia coli B str. REL606], gi\|253976204\|... gi\|253980361, gi... - gi\|254291052\|ref\|YP_003056802.1\| periplasmic protein [Escherichia coli BL21(DE3)], gi\|253980361\|gb\|A... OSMY_ECOL6 - Osmotically-inducible protein Y OS=Escherichia coli O6 GN=osmY PE=3 SV=1 EG11391 - salt-inducible putative ABC transporter periplasmic binding protein / Putative ABC transporter perip... EG11391 - salt-inducible putative ABC transporter periplasmic binding protein / Putative ABC transporter perip... OSMY_ECOL6 - Osmotically-inducible protein Y OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=os...	143.0	[0..1]	[205..1]
gi\|25501249 - pir\|\|H86136 hyperosmotically inducible periplasmic protein [imported] - Escherichia coli (strain O15... gi\|15804947, gi\|... - gi\|15804947\|ref\|NP_290989.1\| periplasmic protein [Escherichia coli O157:H7 EDL933], gi\|12519399\|gb\|A...	143.0	[0..1]	[205..1]
gi\|157785121, gi... - gi\|157803858\|ref\|YP_001492407.1\| hypothetical protein A1E_03435 [Rickettsia canadensis str. McKiel],...	143.0	[0..16]	[204..56]
gi\|22124043, gi\|... - gi\|22124043\|ref\|NP_667466.1\| hypothetical protein y0123 [Yersinia pestis KIM], gi\|21956788\|gb\|AAM837...	143.0	[0..1]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMTRLKISK TLLAVMLTSA VATGSAFAEN ATTDKAQSGT ETAGQKVDSS MNKVGNFMDD  60
   61 SAITAKVKAA LVDHDNIKST DISVETNQKV VTLSGFVESQ AQAEAAVKVA KGVEGVTSVS 120
  121 DKLHVRDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.236572
Match:	PF04972.8
Description:	No description for PF04972.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEGSVKGYAG DTATTSEVKA KLLADDLVPS RKVKVETTDG VVQLSGTVET QEQSDRAESI  60
   61 AKAVDGVKSV KNDLKVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.113509
Match:	PF04972.8
Description:	No description for PF04972.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits