YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213999608
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213999608.

Description	E-value	Query Range	Subject Range
gi\|205331965, gi... - gi\|205331965\|gb\|EDZ18729.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|168462551, gi... - gi\|195634185\|gb\|EDX52537.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|205342676, gi... - gi\|205342676\|gb\|EDZ29440.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|194404199, gi... - gi\|194445536\|ref\|YP_002041180.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|161613526, gi... - gi\|161613526\|ref\|YP_001587491.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|205327877, gi... - gi\|205327877\|gb\|EDZ14641.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... FLHB_SALTY - Flagellar biosynthetic protein FlhB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... lcl\|NC_016856.1_... - [gene=flhB] [protein=flagellar biosynthesis protein FlhB] [protein_id=YP_005237881.1] [location=comp... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|194472731, gi... - gi\|194472731\|ref\|ZP_03078715.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ente... gi\|197251527, gi... - gi\|197251527\|ref\|YP_002146107.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... gi\|238912509 - gi\|238912509\|ref\|ZP_04656346.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente...	0.0	[1..383]	[1..383]
gi\|197093569, gi... - gi\|197362092\|ref\|YP_002141729.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|56127423, gi\|... - gi\|56413166\|ref\|YP_150241.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	0.0	[1..383]	[1..383]
gi\|62180491, gi\|... - gi\|62180491\|ref\|YP_216908.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|224468109, gi... - gi\|224583582\|ref\|YP_002637380.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica...	0.0	[1..383]	[1..383]
gi\|229688933, gi... - gi\|229897892\|ref\|ZP_04513043.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Oriental... gi\|149292674, gi... - gi\|149366261\|ref\|ZP_01888296.1\| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125], gi\|... gi\|145598622, gi... - gi\|145598622\|ref\|YP_001162698.1\| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F], ... gi\|108779073, gi... - gi\|108807160\|ref\|YP_651076.1\| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua], gi\|1087... gi\|165913352, gi... - gi\|89104579\|ref\|ZP_01177118.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Yersinia pes... gi\|167425790, gi... - gi\|167425790\|ref\|ZP_02317543.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaeva... gi\|167401110, gi... - gi\|167401110\|ref\|ZP_02306613.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua ... gi\|186895104, gi... - gi\|186895104\|ref\|YP_001872216.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis PB... gi\|229680323, gi... - gi\|229902876\|ref\|ZP_04517993.1\| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516], gi\|2... gi\|169751191, gi... - gi\|170024657\|ref\|YP_001721162.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis YP... gi\|25322215 - pir\|\|AD0218 flagellar biosynthetic protein FlhB [imported] - Yersinia pestis (strain CO92) gi\|45441419, gi\|... - gi\|45441419\|ref\|NP_992958.1\| flagellar biosynthesis protein FlhB [Yersinia pestis biovar Microtus st... gi\|21959388, gi\|... - gi\|22126401\|ref\|NP_669824.1\| flagellar biosynthesis protein FlhB [Yersinia pestis KIM], gi\|21959388\|... gi\|16122044, gi\|... - gi\|218928912\|ref\|YP_002346787.1\| flagellar biosynthesis protein FlhB [Yersinia pestis CO92], gi\|1612... gi\|165922150, gi... - gi\|165925946\|ref\|ZP_02221778.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Oriental... gi\|166210428, gi... - gi\|166210428\|ref\|ZP_02236463.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua ... gi\|229896231, gi... - gi\|229896231\|ref\|ZP_04511401.1\| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A], g... gi\|166010865, gi... - gi\|166010865\|ref\|ZP_02231763.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua ... gi\|229693503, gi... - gi\|229897166\|ref\|ZP_04512322.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Oriental...	0.0	[1..381]	[1..381]
gi\|152959095, gi... - gi\|77628864\|ref\|ZP_00791450.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Yersinia pse...	0.0	[1..380]	[1..380]
Q3V7P4\|Q3V7P4_YERPS - Flagellar biosynthetic/export protein FlhB - Yersinia pseudotuberculosis gi\|51596001, gi\|... - gi\|51596001\|ref\|YP_070192.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 329...	0.0	[1..381]	[1..381]
gi\|49611156, gi\|... - gi\|50120630\|ref\|YP_049797.1\| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum SCRI10...	0.0	[1..383]	[1..383]
gi\|26108550, gi\|... - gi\|26248146\|ref\|NP_754186.1\| flagellar biosynthesis protein FlhB [Escherichia coli CFT073], gi\|26108... gi\|227837266, gi... - gi\|227885693\|ref\|ZP_04003498.1\| flagellar biosynthesis protein FlhB [Escherichia coli 83972], gi\|227... gi\|226900592, gi... - gi\|237705835\|ref\|ZP_04536316.1\| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA], gi\|... gi\|91072678, gi\|... - gi\|91211104\|ref\|YP_541090.1\| flagellar biosynthesis protein FlhB [Escherichia coli UTI89], gi\|910726... gi\|110343589, gi... - gi\|110641997\|ref\|YP_669727.1\| flagellar biosynthesis protein FlhB [Escherichia coli 536], gi\|1103435... gi\|191172970, gi... - gi\|75239700\|ref\|ZP_00723663.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|117624031, gi... - gi\|117624031\|ref\|YP_852944.1\| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1], gi\|115... gi\|218365513, gi... - gi\|218558744\|ref\|YP_002391657.1\| flagellar biosynthesis protein FlhB [Escherichia coli S88], gi\|2183...	0.0	[1..382]	[1..381]
EG14035 - flagellin export apparatus, substrate specificity protein / Flagellin export apparatus, substrate sp... gi\|192926864, gi... - gi\|75256488\|ref\|ZP_00728134.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|75209443, gi\|... - gi\|75209443\|ref\|ZP_00709671.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|157078381, gi... - gi\|75190908\|ref\|ZP_00704175.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... FLHB_ECOLI - Flagellar biosynthetic protein flhB - Escherichia coli gi\|209912565, gi... - gi\|209919306\|ref\|YP_002293390.1\| flagellar biosynthesis protein FlhB [Escherichia coli SE11], gi\|209... gi\|169889371, gi... - gi\|170081536\|ref\|YP_001730856.1\| flagellar export pore protein [Escherichia coli str. K-12 substr. D... gi\|238901095, gi... - gi\|238901095\|ref\|YP_002926891.1\| putative flagellar export pore protein [Escherichia coli BW2952], g... EG14035 - flagellin export apparatus, substrate specificity protein / Flagellin export apparatus, substrate sp... gi\|1736533, gi\|8... - gi\|89108720\|ref\|AP_002500.1\| predicted flagellar export pore protein [Escherichia coli str. K-12 sub... gi\|218554468, gi... - gi\|218554468\|ref\|YP_002387381.1\| flagellar biosynthesis protein FlhB [Escherichia coli IAI1], gi\|218...	0.0	[1..382]	[1..381]
gi\|190901893, gi... - gi\|75228739\|ref\|ZP_00715352.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ...	0.0	[1..382]	[1..381]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESDDDKT EAPTPHRLEK AREEGQIPRS RELTSLLILL VGVCIIWFGG ESLARQLAGM  60
   61 LSAGLHFDHR MVNDPNLILG QIILLIKAAM MALLPLIAGV VLVALISPVM LGGLIFSGKS 120
  121 LQPKFSKLNP LPGIKRMFSA QTGAELLKAV LKSTLVGC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [159-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTGFYLWNHW PQMMRLMAES PIVAMGNALD LVGLCALLVV LGVIPMVGFD VFFQIFSHLK  60
   61 KLRMSRQDIR DEFKESEGDP HVKGKIRQMQ RAAAQRRMME DVPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [263-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADVIVTNPTH YSVALQYDEN KMSAPKVVAK GAGLIALRIR EIGAEHRVPT LEAPPLARAL  60
   61 YRHAEIGQQI PGQLYAAVAE VLAWVWQLKR WRLAGGQRPP QPENLPVPEA LDFMNEKNTD 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits