YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161863
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161863.

Description	E-value	Query Range	Subject Range
EG14083 - 2-keto-3-deoxy-L-rhamnonate aldolase / 2-keto-3-deoxy-L-rhamnonate aldolase EG14083 - 2-keto-3-deoxy-L-rhamnonate aldolase / 2-keto-3-deoxy-L-rhamnonate aldolase gi\|253974157, gi... - gi\|254162256\|ref\|YP_003045364.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escheric... YFAU_ECOLI - Hypothetical protein yfaU - Escherichia coli gi\|75512721, gi\|... - gi\|75512721\|ref\|ZP_00735223.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... gi\|124501885, gi... - gi\|124526414\|ref\|ZP_01698367.1\| 2-dehydro-3-deoxyglucarate aldolase [Escherichia coli B], gi\|1245018... gi\|254289017, gi... - gi\|254289017\|ref\|YP_003054765.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escheric... gi\|89109062, gi\|... - gi\|89109062\|ref\|AP_002842.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia ... gi\|251785606, gi... - gi\|251785606\|ref\|YP_002999910.1\| hypothetical protein B21_02130 [Escherichia coli BL21], gi\|24237787... RHMA_ECOBW - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rhmA PE=3... RHMA_ECOLC - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=r... gi\|83588231, gi\|... - gi\|83588231\|ref\|ZP_00926856.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... RHMA_ECODH - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain K12 / DH10B) GN=rhmA PE=3 SV=1 RHMA_ECOHS - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O9:H4 (strain HS) GN=rhmA PE=3 SV=1	1.0E-58	[1..267]	[1..267]
gi\|27479658 - gi\|27479658\|gb\|AAO17185.1\| HpaI [Photorhabdus luminescens]	1.0E-58	[5..266]	[4..265]
RHMA_ECOUT - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain UTI89 / UPEC) GN=rhmA PE=3 SV=1 gi\|227835654, gi... - gi\|227887304\|ref\|ZP_04005109.1\| aldolase [Escherichia coli 83972], gi\|227835654\|gb\|EEJ46120.1\| aldol... RHMA_ECO81 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O81 (strain ED1a) GN=rhmA PE=3 SV=1 RHMA_ECOK1 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O1:K1 / APEC GN=rhmA PE=3 SV=1 gi\|226901089, gi... - gi\|237704723\|ref\|ZP_04535204.1\| 2-keto-3-deoxy-L-rhamnonate aldolase [Escherichia sp. 3_2_53FAA], gi... RHMA_ECOL6 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... RHMA_ECOL6, KDRA... - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6 GN=rhmA PE=3 SV=1, 2-keto-3-deoxy-L-rham... RHMA_ECO45 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhmA PE=3 SV...	2.0E-58	[1..267]	[1..267]
RHMA_SHIBS - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella boydii serotype 4 (strain Sb227) GN=rhmA PE=3 SV=1	5.0E-58	[1..267]	[1..267]
RHMA_SHISS - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella sonnei (strain Ss046) GN=rhmA PE=3 SV=1 gi\|194418429, gi... - gi\|194433335\|ref\|ZP_03065615.1\| HpcH/HpaI aldolase/citrate lyase family protein [Shigella dysenteria...	7.0E-58	[1..267]	[1..267]
gi\|190909713, gi... - gi\|75243060\|ref\|ZP_00726766.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia...	1.0E-57	[1..267]	[1..267]
RHMA_ECOL5 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rhmA PE=3...	1.0E-57	[1..267]	[1..267]
KDRA_SALTY - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella typhimurium GN=yfaU PE=3 SV=1 RHMA_SALTY - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... lcl\|NC_016856.1_... - [gene=STM14_2826] [protein=putative aldolase] [protein_id=YP_005238362.1] [location=complement(24475... RHMA_SALCH - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella choleraesuis (strain SC-B67) GN=rhmA PE=3 SV=1 RHMA_SALPC - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi C (strain RKS4594) GN=rhmA PE=3 SV=1 RHMA_SALA4 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella agona (strain SL483) GN=rhmA PE=3 SV=1 gi\|197244045, gi... - gi\|197265790\|ref\|ZP_03165864.1\| 2-dehydro-3-deoxyglucarate aldolase [Salmonella enterica subsp. ente... gi\|205349486, gi... - gi\|205349486\|gb\|EDZ36117.1\| 2-dehydro-3-deoxyglucarate aldolase [Salmonella enterica subsp. enterica... RHMA_SALSV - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella schwarzengrund (strain CVM19633) GN=rhmA PE=3 SV=... gi\|167992624, gi... - gi\|205329164\|gb\|EDZ15928.1\| 2-dehydro-3-deoxyglucarate aldolase [Salmonella enterica subsp. enterica... gi\|197289701, gi... - gi\|197289701\|gb\|EDY29064.1\| 2-dehydro-3-deoxyglucarate aldolase (2-keto-3-deoxyglucarate aldolase) [... RHMA_SALTY, KDRA... - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella typhimurium GN=rhmA PE=3 SV=1, 2-keto-3-deoxy-L-r... KDRA_SALCH - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella choleraesuis GN=yfaU PE=3 SV=1 RHMA_SALCH, KDRA... - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella choleraesuis GN=rhmA PE=3 SV=1, 2-keto-3-deoxy-L-...	2.0E-57	[1..267]	[1..267]
RHMA_SALPA - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rhmA P... RHMA_SALPA, KDRA... - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi A GN=rhmA PE=3 SV=1, 2-keto-3-deoxy-L-r... RHMA_SALPK - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi A (strain AKU_12601) GN=rhmA PE=3 SV=1	6.0E-57	[1..267]	[1..267]
gi\|36784398, gi\|... - gi\|37524972\|ref\|NP_928316.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Photorhabdus luminesce...	6.0E-57	[5..263]	[4..262]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALLSNPFK EGLRKRDTQI GLWLSSTTSY MAEIAATSGY DWLLIDGEHA PNTVQDLYHQ  60
   61 LQAIAPYASQ PVIRPIEGSK ALIKQVLDIG AQTLLIPMVD TAEQARQVVS ATRYPPLGQR 120
  121 GVGASVARAA RWGRIDNYMA QANESLCLLV QVESKVALEN LDAILEVEGI DGVFIGPADL 180
  181 SASLGYPDNA GHPEVQRIIE SCIYRIRAAG KAAGFLAVDP AMAQKCLAWG ANFVAVGVDT 240
  241 MLYTEALDSR LAMFKSVQSV STAKRSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	2v5jA
Description:	No description for 2v5jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits