YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213650247
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	706 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213650247.

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=yncD] [protein=putative outer membrane receptor] [protein_id=YP_005237487.1] [location=1683887... gi\|16420110, gi\|... - gi\|16764931\|ref\|NP_460546.1\| putative outer membrane receptor [Salmonella typhimurium LT2], gi\|16420...	0.0	[1..706]	[1..706]
gi\|56127724, gi\|... - gi\|56413467\|ref\|YP_150542.1\| TonB-dependent receptor [Salmonella enterica subsp. enterica serovar Pa... gi\|197362391, gi... - gi\|197362391\|ref\|YP_002142028.1\| probable TonB-dependent receptor [Salmonella enterica subsp. enteri...	0.0	[1..706]	[1..706]
gi\|237705431, gi... - gi\|237705431\|ref\|ZP_04535912.1\| tonB-dependent receptor YncD [Escherichia sp. 3_2_53FAA], gi\|2269001... gi\|115512816, gi... - gi\|117623692\|ref\|YP_852605.1\| iron outer membrane transporter [Escherichia coli APEC O1], gi\|1155128... gi\|91210693, gi\|... - gi\|91210693\|ref\|YP_540679.1\| tonB-dependent receptor YncD precursor [Escherichia coli UTI89], gi\|910...	0.0	[1..706]	[1..700]
EG13774 - putative iron outer membrane transporter / Putative TonB-dependent outer membrane receptor; function... YNCD_ECOLI - Probable tonB-dependent receptor yncD precursor - Escherichia coli gi\|238900678, gi... - gi\|238900678\|ref\|YP_002926474.1\| putative iron outer membrane transporter [Escherichia coli BW2952],... gi\|169888960, gi... - gi\|170081125\|ref\|YP_001730445.1\| iron outer membrane transporter [Escherichia coli str. K-12 substr.... gi\|89108294, gi\|... - gi\|89108294\|ref\|AP_002074.1\| predicted iron outer membrane transporter [Escherichia coli str. K-12 s... EG13774 - putative iron outer membrane transporter / Putative TonB-dependent outer membrane receptor; function...	0.0	[1..706]	[1..700]
gi\|81245499, gi\|... - gi\|82544088\|ref\|YP_408035.1\| putative outer membrane receptor for iron transport [Shigella boydii Sb... gi\|157156568, gi... - gi\|157156568\|ref\|YP_001462725.1\| TonB-dependent receptor [Escherichia coli E24377A], gi\|157078598\|gb... gi\|218553977, gi... - gi\|218553977\|ref\|YP_002386890.1\| putative iron outer membrane receptor [Escherichia coli IAI1], gi\|2...	0.0	[1..706]	[1..700]
gi\|254792996, gi... - gi\|254792996\|ref\|YP_003077833.1\| predicted iron outer membrane transporter [Escherichia coli O157:H7... gi\|13361521, gi\|... - gi\|15831309\|ref\|NP_310082.1\| putative outer membrane receptor for iron transport [Escherichia coli O... gi\|217317765, gi... - gi\|217329326\|ref\|ZP_03445406.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|13361521, gi\|... - gi\|15831309\|ref\|NP_310082.1\| putative outer membrane receptor for iron transport [Escherichia coli O... gi\|208816089, gi... - gi\|208816089\|ref\|ZP_03257268.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|25300754, gi\|... - pir\|\|G90885 hypothetical protein ECs2055 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208724651, gi... - gi\|208811145\|ref\|ZP_03252978.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|209398339, gi... - gi\|209398339\|ref\|YP_002270458.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|208738394, gi... - gi\|208818271\|ref\|ZP_03258591.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|168788491, gi... - gi\|189371777\|gb\|EDU90193.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC869], gi\|168788... gi\|189000894, gi... - gi\|189000894\|gb\|EDU69880.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|195936942 - gi\|195936942\|ref\|ZP_03082324.1\| putative outer membrane receptor for iron transport [Escherichia col... gi\|189378174, gi... - gi\|189378174\|gb\|EDU96590.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC508], gi\|168799... gi\|168761455, gi... - gi\|189368129\|gb\|EDU86545.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|168756095, gi... - gi\|189356662\|gb\|EDU75081.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|168774314, gi... - gi\|187769990\|gb\|EDU33834.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|189361986, gi... - gi\|189361986\|gb\|EDU80405.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|188016685, gi... - gi\|188016685\|gb\|EDU54807.1\| TonB-dependent receptor [Escherichia coli O157:H7 str. EC4113], gi\|16874...	0.0	[1..706]	[1..700]
gi\|75240197, gi\|... - gi\|75240197\|ref\|ZP_00724149.1\| COG1629: Outer membrane receptor proteins, mostly Fe transport [Esche... gi\|110343222, gi... - gi\|110641630\|ref\|YP_669360.1\| tonB-dependent receptor YncD precursor [Escherichia coli 536], gi\|1103...	0.0	[1..706]	[1..700]
gi\|74312192, gi\|... - gi\|74312192\|ref\|YP_310611.1\| putative outer membrane receptor for iron transport [Shigella sonnei Ss...	0.0	[1..706]	[1..700]
gi\|15801692, gi\|... - gi\|15801692\|ref\|NP_287710.1\| putative outer membrane receptor for iron transport [Escherichia coli O... gi\|25300756 - pir\|\|H85732 hypothetical protein Z2268 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	0.0	[1..706]	[1..700]
gi\|83570848 - gi\|83570848\|ref\|ZP_00922290.1\| COG1629: Outer membrane receptor proteins, mostly Fe transport [Shige...	0.0	[1..706]	[1..700]

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Predicted Domain #1

Region A:
Residues: [1-706]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIISVRQRL YPALLLPLTF SPVLQAASAP NEQTMIVTAT PQTVSELDTP AAVSVIEGED  60
   61 MRLATPRVNL SESLTSVPGL QVQNRQNYAQ DLQISIRGFG SRSAFGVRGI RLYVDGIPAT 120
  121 MPDGQGQISN IDINSIQNVE VLRGPFSALY GNASGGVINV TTETGRQPPT LEASSYYGSY 180
  181 GSWRYGLKAT GAMGDGTQPG DVDYTVSTTR FTTHGYRDHS GARKNLANAK LGVRLDDVSK 240
  241 LSLIFNSVDI KADDPGGLTE SEWKADPQQA PRAEQYNTRK TIKQTQAGLR YERQLSAQDD 300
  301 ISVMAYAGER ETTQYQSIPL VAQLKPAQAG GVITLQRHYQ GIDSRWTHRG ELGVPVTFTG 360
  361 GLNYENMSEN RKGYNNFRLN NGTPEFGHKG DLRRDERNLM WNVDPYLQTQ WQLTQKLSLD 420
  421 AGVRYSSVWF DSNDHYIAPG NGDDSGDASY HHWLPAGSLK YALTDAWNLY LAAGRGFETP 480
  481 TINELSYRAD GQSGFNFDLK PSTNDTVEVG SKTRIGNGLL TAALFQTDTD DEIVVASSMG 540
  541 GRTTYKNAGK TRRQGAELAL DQRFAGDWRV KASWTWLDAT YRSNVCQGQN CDGNRMPGIA 600
  601 RNMGFASLGF IPDEGWYAGT DVRYMGDIMA NDENTAKAPS YTVVGLNTGY KFNYSQLTVD 660
  661 IFGRVDNLFD EEYIGSVIVN ESNGRYYEPA PGRNYGVGIN LAWQFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.0
Match:	1by3A
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.15398171369398	bayes_pls_golite062009
substrate-specific transporter activity	2.43332676180972	bayes_pls_golite062009
transmembrane transporter activity	1.99898520864149	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.37880749517427	bayes_pls_golite062009
ion transmembrane transporter activity	0.9810521942815	bayes_pls_golite062009
porin activity	0.896682978257159	bayes_pls_golite062009
cation transmembrane transporter activity	0.89213734347785	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.70757821289609	bayes_pls_golite062009
binding	0.643879907209189	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.60516455096546	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.17491456011246	bayes_pls_golite062009
lipid transporter activity	0.10911346172326	bayes_pls_golite062009
protein binding	0.0112080975548029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: