YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221319450
Organism:	Bacillus subtilis subsp. subtilis str. JH642
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221319450.

Description	E-value	Query Range	Subject Range
IDI2_BACLD - Isopentenyl-diphosphate delta-isomerase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM ...	274.0	[0..1]	[349..1]
IDI2_BACWK - Isopentenyl-diphosphate delta-isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=fni PE=3 SV... gi\|229132405, gi... - gi\|229132405\|ref\|ZP_04261259.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus BDRD-ST196]...	271.0	[0..1]	[349..1]
gi\|254755084 - gi\|254755084\|ref\|ZP_05207118.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. Vollum] gi\|254759621 - gi\|254759621\|ref\|ZP_05211645.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. Austral... gi\|49178353, gi\|... - gi\|49184426\|ref\|YP_027678.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. Sterne], g... gi\|47526794, gi\|... - gi\|47526794\|ref\|YP_018143.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. 'Ames Ance... gi\|30261594, gi\|... - gi\|30261594\|ref\|NP_843971.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. Ames], gi\|... gi\|65318865, gi\|... - gi\|65318865\|ref\|ZP_00391824.1\| COG1304: L-lactate dehydrogenase (FMN-dependent) and related alpha-hy... gi\|164714767, gi... - gi\|165869327\|ref\|ZP_02213986.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis str. A04... gi\|167633178, gi... - gi\|167633178\|ref\|ZP_02391503.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis str. A04... gi\|167512840, gi... - gi\|167639050\|ref\|ZP_02397323.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis str. A01... IDI2_BACAC - Isopentenyl-diphosphate delta-isomerase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=fni PE... IDI2_BACAN - Isopentenyl-diphosphate delta-isomerase OS=Bacillus anthracis GN=fni PE=3 SV=1 gi\|170686131, gi... - gi\|170686131\|ref\|ZP_02877353.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis str. A04... IDI2_BACAA - Isopentenyl-diphosphate delta-isomerase OS=Bacillus anthracis (strain A0248) GN=fni PE=3 SV=1 gi\|170128677, gi... - gi\|170706579\|ref\|ZP_02897039.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis str. A03... gi\|254683086 - gi\|254683086\|ref\|ZP_05146947.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. CNEVA-9... gi\|177650567, gi... - gi\|177650567\|ref\|ZP_02933534.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis str. A01... gi\|254723674 - gi\|254723674\|ref\|ZP_05185460.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. A1055] gi\|190568619, gi... - gi\|190568619\|ref\|ZP_03021524.1\| isopentenyl-diphosphate delta-isomerase [Bacillus anthracis Tsiankov... gi\|254733535 - gi\|254733535\|ref\|ZP_05191256.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. Western... gi\|254740846 - gi\|254740846\|ref\|ZP_05198534.1\| isopentenyl pyrophosphate isomerase [Bacillus anthracis str. Kruger ...	271.0	[0..1]	[349..1]
gi\|47565961, gi\|... - gi\|47565961\|ref\|ZP_00236999.1\| isopentenyl diphosphate isomerase [Bacillus cereus G9241], gi\|4755687...	271.0	[0..1]	[349..1]
IDI2_BACHK - Isopentenyl-diphosphate delta-isomerase OS=Bacillus thuringiensis subsp. konkukian GN=fni PE=3 SV=1 IDI2_BACHK - Isopentenyl-diphosphate delta-isomerase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN...	269.0	[0..1]	[349..1]
gi\|228852451, gi... - gi\|228907230\|ref\|ZP_04071091.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus thuringiensis IBL ... gi\|228900179, gi... - gi\|228900179\|ref\|ZP_04064411.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus thuringiensis IBL ... gi\|75763038, gi\|... - gi\|75763038\|ref\|ZP_00742827.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus thuringiensis serov... IDI2_BACC2 - Isopentenyl-diphosphate delta-isomerase OS=Bacillus cereus (strain G9842) GN=fni PE=3 SV=1	269.0	[0..1]	[349..1]
IDI2_BACCZ - Isopentenyl-diphosphate delta-isomerase OS=Bacillus cereus (strain ZK / E33L) GN=fni PE=3 SV=1	269.0	[0..1]	[349..1]
IDI2_BACC1 - Isopentenyl-diphosphate delta-isomerase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=fni PE=3...	268.0	[0..1]	[349..1]
IDI2_BACCR - Isopentenyl-diphosphate delta-isomerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... gi\|229109054, gi... - gi\|229109054\|ref\|ZP_04238654.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus Rock1-15], ... gi\|229043343, gi... - gi\|229043343\|ref\|ZP_04191061.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus AH676], gi\|... gi\|228801790, gi... - gi\|228957874\|ref\|ZP_04119614.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus thuringiensis sero... gi\|228593729, gi... - gi\|229189680\|ref\|ZP_04316694.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus ATCC 10876]... gi\|228633660, gi... - gi\|229149796\|ref\|ZP_04278025.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus m1550], gi\|... gi\|228639205, gi... - gi\|229144197\|ref\|ZP_04272611.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus BDRD-ST24],... gi\|228656512, gi... - gi\|229126912\|ref\|ZP_04255923.1\| Isopentenyl-diphosphate delta-isomerase [Bacillus cereus BDRD-Cer4],...	268.0	[0..1]	[349..1]

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Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRAERKRQH INHALSIGQK RETGLDDITF VHVSLPDLAL EQVDISTKIG ELSSSSPIFI  60
   61 NAMTGGGGKL TYEINKSLAR AASQAGIPLA VGSQMSALKD PSERLSYEIV RKENPNGLIF 120
  121 ANLGSEATAA QAKEAVEMIG ANALQIHLNV IQEIVMPEGD RSFSGALKRI EQICSRVSVP 180
  181 VIVKEVGFGM SKASAGKLYE AGAAAVDIGG YGGTNFSKIE NLRRQRQISF FNSWGISTAA 240
  241 SLAEIRSEFP ASTMIASGGL QDALDVAKAI ALGASCTGMA GHFLKALTDS GEEGLLEEIQ 300
  301 LILEELKLIM TVLGARTIAD LQKAPLVIKG ETHHWLTERG VNTSSYSVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1p0kA
Description:	Isopentenyl-diphosphate delta-isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.31793084876503	bayes_pls_golite062009
oxidoreductase activity	1.59709503080261	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	1.23058140939496	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: